Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 53 Aligned Residues 358 % Identity 22% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		2	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure								.																						.																															.	.	.
Query SS confidence								.																						.																															.	.	.
Query Sequence		F	Q	K	V	D	A	.	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	.	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	.	.	.	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R
Query Conservation								.																						.																															.	.	.
Alig confidence								.																						.							.	.	.	.	.																				.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		F	V	S	L	T	K	N	Y	L	F	A	D	L	Q	K	R	V	A	Q	F	R	L	E	N	P	Q	H	T	V	I	N	L	S	I	G	.	.	.	.	.	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P	A	L	R
Template Known Secondary structure				T																						T	T	S						S	S		.	.	.	.	.																						T	S	S	S								T	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	.	S	T	Y	P	W	Y	D	E	A	T
Query Conservation																																																																							.
Alig confidence													.	.	.									.	.													.	.	.																															.
Template Conservation													.	.	.									.	.													.	.	.
Template Sequence		Q	K	L	S	E	D	F	Y	R	G	F	.	.	.	V	D	A	K	E	I	F	I	.	.	S	D	G	A	K	V	D	L	F	R	L	L	.	.	.	S	F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N	A
Template Known Secondary structure							T	T	S	T	T	S	.	.	.	S		G	G	G				.	.		S											.	.	.					S	S								S												T	T		S									G	G	G	T
Template Predicted Secondary structure													.	.	.									.	.													.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																																							.
Template Conservation									.	.	.	.	.	.	.	.																																																							.
Template Sequence		F	F	P	E	F	P	E	.	.	.	.	.	.	.	.	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	.	P	K	S	I	F	E	I	P	D	A
Template Known Secondary structure		T						T	.	.	.	.	.	.	.	.	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S	.		S	S	G	G	G	S	T	T	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																							.
Template SS confidence
		154	.	.	.	.	.	160									.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	.	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E
Query Conservation																																						.
Alig confidence																																						.																														.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.
Template Sequence		R	F	C	A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	.	.	.	.	.	.	.	.	I	L	P	Q	L	E
Template Known Secondary structure		G	G	T									G	G	G	T	T	T	T										T	T		B		T	T	S		B																														.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.							.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.											.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	.	.	.	.	R	M	C	V
Query Conservation																																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	T	G	.	.	.	.	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	S	S
Template Known Secondary structure																				T	T	.	.	.	.							S	S	S	S									T	T			T	T	T										S						G	G	G	G		G	G	G	T	T
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		L	.	G	K	R	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure			.	S
Template Predicted Secondary structure			.
Template SS confidence
		373		.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions