Job Description P04693 Confidence 99.90% Date Thu Jan 5 10:58:18 GMT 2012 Rank 164 Aligned Residues 308 % Identity 16% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	.	.	.	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G
Query Conservation																																									.	.	.
Alig confidence																														.							.				.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																														.							.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	P	I	F	Q	T	S	T	F	C	F	D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	.	H	I	Y	S	R	L	.	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	.	.	.	.	.	.	.	.	.	.	S	A	A	F	G	S	G	M	G	A	I	S	S	S
Template Known Secondary structure		S							S	B				S	S									T	T		S	S		.		S	B	T	T	T	.																	T		S		.	.	.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																														.							.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1523	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550		.	.	.	.	.	.		.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.											.	.	.	1580	.	.	.	.	.	.	.	.	.	1590
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	.	.	.	.	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G
Query Conservation																								.	.	.	.
Alig confidence						.	.																	.	.	.	.																	.	.	.	.	.	.	.																	.	.	.
Template Conservation						.	.																																					.	.	.	.	.	.	.																	.	.	.
Template Sequence		T	L	A	F	.	.	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	.	.	.	.	.	.	.	T	S	D	V	E	K	V	K	A	A	W	K	P	N	T	K	.	.	.	M	V	Y	L	E	S	P	A	N	P	T	C
Template Known Secondary structure			T	T	T	.	.			T	T							S	S																T	T								.	.	.	.	.	.	.	T	T	S										T	T			.	.	.						S	S		T	T	T
Template Predicted Secondary structure						.	.																																					.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		1591	.	.	.			.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630								.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.				.	.	.	1650	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E
Query Conservation
Alig confidence						.	.	.																													.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation						.	.	.																													.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		K	V	S	D	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	.	.	.	.	.	.	.	.	.	.	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	.	.	.
Template Known Secondary structure						.	.	.												T								T	T	T		T	T	T			.	.	.	.	.	.	.	.	.	.	G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S	.	.	.
Template Predicted Secondary structure						.	.	.																													.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		1659	1660	.	.				.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690											.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence		.	.																																	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation		.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	.	.	.	.	.	.	.	.	.	.	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F
Template Known Secondary structure		.	.																															T	T	.	.	.	.	.	.	.	.	.	.																					T		T	T							T	T	S	T	T	S
Template Predicted Secondary structure		.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				1723	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.											.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790
												343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.																																		.	.		.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	.	G	R	M	C	V
Query Conservation		.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Alig confidence		.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Template Conservation
Template Sequence		P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V
Template Known Secondary structure		T	T									S	S			S							S	S									T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T
Template Predicted Secondary structure
Template SS confidence
		1791	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence		.			.	.
Template Conservation		.			.	.
Template Sequence		.	G	I	.	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L
Template Known Secondary structure		.		S	.	.	S
Template Predicted Secondary structure		.			.	.
Template SS confidence
			1871	.			.	.	.	.	.	.	.	1880	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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