Job Description P04693 Confidence 99.85% Date Thu Jan 5 10:58:18 GMT 2012 Rank 200 Aligned Residues 345 % Identity 12% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	.	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A
Query Conservation																																															.
Alig confidence																		.	.														.	.	.	.											.														.	.	.	.
Template Conservation																		.	.														.	.	.	.																									.	.	.	.
Template Sequence		Y	D	S	L	S	G	L	W	T	C	G	A	G	H	T	R	.	.	K	E	I	Q	E	A	V	A	K	Q	L	S	T	.	.	.	.	L	D	Y	S	P	G	F	Q	Y	G	H	P	L	S	F	Q	L	A	E	K	I	T	D	L	.	.	.	.	T	P	G	N	L	N	H	V	F	F	T	D	S	G	S	E	C
Template Known Secondary structure				T	T					T		T	T		B	S		.	.											T	T	T	.	.	.	.		S				S	S	S															T	T	.	.	.	.	S	S	T	T								S	S
Template Predicted Secondary structure																		.	.														.	.	.	.																									.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		108	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																140	.	.	.	.	.	.	.	.	.	150										.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		L	K	V	G	A	D	F	L	K	R	Y	.	.	.	.	.	.	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	F	E	V	S	T	Y	P	W	.	.	.	.	.	.	.	.	.	Y	D	E	A	T	N	G
Query Conservation													.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	T	A	V	K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N	G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E	G	G	I
Template Known Secondary structure																T	T		T	T								T	T					S	S														T	T	T				S		S										G	G	G	T	T		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	.	.	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A
Query Conservation																																.	.
Alig confidence																																.	.
Template Conservation
Template Sequence		A	L	A	D	E	L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R	E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	M	F	G	A	D	S	F	G	V	T	P	D
Template Known Secondary structure																G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S						T				S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	.	.	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E
Query Conservation																																							.	.
Alig confidence		.	.	.	.	.	.																																.	.																													.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	M	C	I	A	K	Q	V	T	N	G	A	I	P	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	Y	A	V	E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	C	.	.	.	.	.	.	.	.	L	L	Q	K	E
Template Known Secondary structure		.	.	.	.	.	.						G	G	G	G	T	T	S	S																	T		S	S		T	T	S		S	S					T	T	T	T														.	.	.	.	.	.	.	.					T
Template Predicted Secondary structure		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template SS confidence
								283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.									.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.		.	380	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.																	.	.	.						.
Query SS confidence																																														.	.	.	.	.	.	.	.																	.	.	.						.
Query Sequence		E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	.	.	.	.	.	.	.	.	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	G	R	M	C	V	.	A	G	L
Query Conservation																																														.	.	.	.	.	.	.	.																	.	.	.						.
Alig confidence																																														.	.	.	.	.	.	.	.																	.	.	.						.
Template Conservation
Template Sequence		N	L	V	Q	S	V	A	E	V	A	P	H	F	E	K	A	L	H	G	I	K	G	A	K	N	V	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	R	F	G	G	D	T	L	Q	F	G	P	T	F	N	S
Template Known Secondary structure		T																		T	T	T	T	S	T	T								T	T									B	T	T	B	S	S														T							T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	Q	D	L	D	R	L	F	D	A	V	G	E	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions