Job Description P04693 Confidence 99.96% Date Thu Jan 5 10:58:18 GMT 2012 Rank 95 Aligned Residues 336 % Identity 12% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.												.	.	.	.	.												.	.																								.	.	.	.
Template Conservation														.	.	.	.	.	.	.												.	.	.	.	.												.	.																								.	.	.	.
Template Sequence		E	H	A	D	P	V	I	T	L	T	A	G	.	.	.	.	.	.	.	P	V	N	A	Y	P	E	V	L	R	G	.	.	.	.	.	L	G	R	T	V	L	Y	D	Y	D	P	.	.	A	F	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	.	.	.	.	V	I	L	H	G
Template Known Secondary structure		T	T	S			S					S	S	.	.	.	.	.	.	.	S											.	.	.	.	.	T	T	S					T	T	S		.	.																	T	T		S	S			.	.	.	.				S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.												.	.	.	.	.												.	.																								.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C
Query Conservation
Alig confidence															.	.																																																																	.
Template Conservation															.	.																																																																	.
Template Sequence		E	P	V	L	G	L	E	A	A	A	A	S	L	.	.	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	V	S	V	C	H	H	.
Template Known Secondary structure			T												.	.			T	T								S	S															S									T	T	S															T	T								S		.
Template Predicted Secondary structure															.	.																																																																	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M
Query Conservation
Alig confidence											.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template Conservation											.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template Sequence		D	T	P	S	G	T	I	N	P	.	.	.	I	D	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	G	M	K	T	H	P	.	.	.	.	.	.	.	.	.	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	.	A	P	P	G	L	T	M	M	G	V	S
Template Known Secondary structure			G	G	G	T					.	.	.											T	T								T	T	T	B	T	T	B	S			G	.	.	.	.	.	.	.	.	.	G	G	T	T		S						S	S	S	T	T		.			S
Template Predicted Secondary structure											.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		145	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.
		263	.	.	.	.	.	.	270														.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	E	D	A	E	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		E	R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	.	.	.	.	.	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G
Template Known Secondary structure										T		T	T	S			S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			S	S																			.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																		.	.	.	.	.	.	.	.						.	.
Query SS confidence																													.	.	.	.	.																		.	.	.	.	.	.	.	.						.	.
Query Sequence		L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	G	R	M	C	V	.	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A
Query Conservation																													.	.	.	.	.																		.	.	.	.	.	.	.	.						.	.
Alig confidence																													.	.	.	.	.																		.	.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		V	T	A	M	G	L	S	V	W	A	A	S	D	S	I	A	S	P	T	T	T	A	V	R	T	P	D	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G
Template Known Secondary structure						T			B	S	S	S	S	G	G	G	B		S	S								T	T																			B				G	G	G	T	T	T								G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		395	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions