Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 64 Aligned Residues 349 % Identity 15% Template c2z61A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		Q	K	V	D	A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	.	.	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A
Query Conservation																						.	.
Alig confidence																						.	.													.	.	.	.	.																					.	.
Template Conservation																																				.	.	.	.	.																					.	.
Template Sequence		K	R	L	L	N	F	E	S	F	E	V	M	D	I	L	A	L	A	Q	K	L	E	S	E	G	K	K	V	I	H	L	E	I	G	.	.	.	.	.	E	P	D	F	N	T	P	K	P	I	V	D	E	G	I	K	S	L	K	E	.	.	G	K	T	H	Y	T	D	S	R	G	I	L	E	L	R	E	K	I	S
Template Known Secondary structure											T	T													T	T										.	.	.	.	.	S		S	S																T	.	.	T			S				T	T
Template Predicted Secondary structure																																				.	.	.	.	.																					.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F
Query Conservation
Alig confidence																				.	.																.	.																																					.	.	.	.	.	.	.
Template Conservation																				.	.																.	.																																					.	.	.	.	.	.	.
Template Sequence		E	L	Y	K	D	K	Y	K	A	D	I	I	P	D	N	I	I	I	.	.	T	G	G	S	S	L	G	L	F	F	A	L	S	S	I	.	.	I	D	D	G	D	E	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	F	I	R	F	L	G	A	K	P	V	F	C	D	F	T	V	E	.	.	.	.	.	.	.
Template Known Secondary structure								S	S					G	G	G				.	.		S	S													.	.			T	T							S	S			T									T	T								S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.																.	.																																					.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L
Query Conservation
Alig confidence		.	.	.	.																												.	.	.	.																													.	.
Template Conservation		.	.	.	.																												.	.	.	.																													.	.
Template Sequence		.	.	.	.	S	L	E	E	A	L	S	D	K	T	K	A	I	I	I	N	S	P	S	N	P	L	G	E	V	I	D	.	.	.	.	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G	L	V	Y	E	G	K	.	.	C	Y	S	A	I	E	F	D	E	N	L	E	K	T	I
Template Known Secondary structure		.	.	.	.								S	S								S	S		T	T	T						.	.	.	.												S							T	T	T	T		B	S	S	S		.	.				G	G	G	T		T	T		S	S
Template Predicted Secondary structure		.	.	.	.																												.	.	.	.																													.	.
Template SS confidence
						146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L
Query Conservation
Alig confidence												.																								.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation												.																								.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		L	I	N	G	F	S	L	Y	A	M	.	T	G	W	R	I	G	Y	V	I	S	N	D	E	I	I	E	A	I	L	K	L	Q	Q	.	.	.	.	.	.	.	N	L	F	I	S	A	P	T	I	S	Q	Y	A	A	L	K	A	F	E	.	.	.	.	.	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D
Template Known Secondary structure												.	G	G	G																					.	.	.	.	.	.	.			T	S	S	S									G	G	G	G	S	.	.	.	.	.
Template Predicted Secondary structure												.																								.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q
Query Conservation																																				.	.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																	.	.	.																				.	.	.	.	.	.	.	.	.	.								.
Template Conservation																.	.	.	.																																																								.
Template Sequence		R	R	R	R	L	V	L	K	Y	V	K	D	F	G	.	.	.	.	W	E	V	N	N	P	I	G	A	Y	Y	V	F	P	N	I	G	E	D	G	R	E	F	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	G	S	K	G	K	N	Y	I	R	I	S	Y	A	N	.	S	Y	E	N	I	K
Template Known Secondary structure														T	T	.	.	.	.		B						B	T	T					B		S	S																				G	G	G	G		G	G	G	S	S	B							S	.
Template Predicted Secondary structure																.	.	.	.																																																								.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	L	E	R	I	K	E	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions