Job Description P04693 Confidence 99.95% Date Thu Jan 5 10:58:18 GMT 2012 Rank 120 Aligned Residues 324 % Identity 17% Template c2yrrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 Resolution 1.86 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	.	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G
Query Conservation																																															.
Alig confidence									.	.	.	.	.	.	.												.	.	.	.																	.												.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.												.	.	.	.																													.	.	.	.	.	.
Template Sequence		M	L	L	L	T	P	G	.	.	.	.	.	.	.	P	T	P	I	P	E	R	V	Q	K	A	.	.	.	.	L	L	R	P	M	R	G	H	L	D	P	E	V	L	R	V	N	R	A	I	Q	E	R	L	A	A	L	F	.	.	.	.	.	.	D	P	G	E	G	A	L	V	A	A	L	A	G	S	G	S	L
Template Known Secondary structure						S	S	S	.	.	.	.	.	.	.	S									G	G	.	.	.	.	G	G	S					T	T																				.	.	.	.	.	.				T	T							S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.												.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.								.	.	10	.	.	.	.	.	.	.	.					.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	.	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P
Query Conservation																											.
Alig confidence								.	.	.																	.																							.	.																			.	.
Template Conservation								.	.	.																																								.	.																			.	.
Template Sequence		G	M	E	A	G	L	.	.	.	A	N	L	D	R	G	P	V	L	V	L	V	N	G	A	F	S	Q	R	V	A	E	M	A	A	L	H	G	L	D	P	E	V	L	D	F	P	P	G	.	.	E	P	V	D	P	E	A	V	A	R	A	L	K	R	R	R	Y	R	.	.	M	V	A	L	V	H	G	E	T	S
Template Known Secondary structure								.	.	.		T		S										S													T	T										T	T	.	.	S														S			S	.	.						S			T	T
Template Predicted Secondary structure								.	.	.																																								.	.																			.	.
Template SS confidence
		64	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D
Query Conservation
Alig confidence								.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template Conservation								.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template Sequence		T	G	V	L	N	P	.	.	.	A	E	A	I	G	A	L	A	K	E	A	G	A	L	F	F	L	D	A	V	T	T	L	G	M	L	P	F	S	M	.	.	.	.	.	.	.	.	.	R	A	M	G	V	D	Y	A	F	T	G	S	Q	K	C	L	S	.	A	P	P	G	L	A	P	I	A	A	S	L	E	A
Template Known Secondary structure		T	T					.	.	.												T								T	T	T	T	T	T	S					.	.	.	.	.	.	.	.	.				T		S						T	T	S	T	T		.			S	S
Template Predicted Secondary structure								.	.	.																															.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		137	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.										.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.
		266	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	A	A	.	.	.	.	.	.	.	.	.	.	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		R	K	A	F	T	G	K	R	G	W	Y	L	D	L	A	R	V	A	E	H	W	E	R	G	G	Y	H	H	T	T	P	V	L	L	H	Y	A	L	L	E	A	L	D	L	V	L	.	.	.	.	.	.	.	E	E	G	V	A	A	R	E	R	R	A	R	E	V	Y	A	W	V	L	E	E	L	K	A	R	G	F
Template Known Secondary structure									S		S	T	T										T	T				S	S																			.	.	.	.	.	.	.																									T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																						.	.	.	.	.	.	.	.						.	.
Query SS confidence																			.	.	.	.																						.	.	.	.	.	.	.	.						.	.
Query Sequence		E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	G	R	M	C	V	.	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																			.	.	.	.																						.	.	.	.	.	.	.	.						.	.
Alig confidence			.	.															.	.	.	.																						.	.	.	.	.	.	.	.						.	.
Template Conservation			.	.
Template Sequence		R	.	.	P	Y	P	K	A	S	P	L	P	T	V	L	V	V	R	P	P	E	G	V	D	A	D	R	L	V	R	A	L	Y	A	E	G	V	A	V	A	G	G	I	G	P	T	R	G	Q	V	L	R	L	G	L	M	G	E	G	A	R	R	E	A	Y	Q	A	F	L	K	A	L	D	R	A	L
Template Known Secondary structure			.	.		S		S	S	S	B		T	T								T	T													T	T								G	G	G	T	T	T							S	G	G	G	S
Template Predicted Secondary structure			.	.
Template SS confidence
		277			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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