Phyre 2 alignment of P04693 with c2x3lA

Job Description P04693
Confidence 99.94% Date Thu Jan 5 10:58:18 GMT 2012

Rank 124 Aligned Residues 283

% Identity 14% Template c2x3lA_

PDB info PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence	H	H	P	E	E	V	I	L	K	S	M	K	Q	V	E	K	H	S	D	.	.	.	.	.	.	.	.	.	.	Y	D	G	Y	F	L	V	N	G	T	T	S	G	I	L	S	V	I	Q	S	F	.	.	S	Q	K	K	G	D	I	L	M	A	R	N	V	H	K	S	V	L	H	A	L	D	I	S	Q	Q	E	G
Template Known Secondary structure	T	S		S	S											S		T	T	.	.	.	.	.	.	.	.	.	.							S	S												T	T	.	.	T	T	S	S	S						T	T													T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.											.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																					.	.									.	.	.
Template Conservation									.	.	.	.	.	.	.	.																					.	.									.	.	.
Template Sequence	H	F	I	E	T	H	Q	S	.	.	.	.	.	.	.	.	P	L	T	N	H	Y	N	K	V	N	L	H	K	L	V	V	L	T	Y	P	.	.	N	Y	Y	G	E	T	F	N	.	.	.	V	E	E	V	I	K	S	L	H	Q	L	N	I	P	V	L	I	D	E	A	H	G	A	H	F	G	L	Q	G	F	P
Template Known Secondary structure									.	.	.	.	.	.	.	.	T	T	T	S	S														S	S	.	.		T	T	S					.	.	.											T	T								T	T		T	T	T	T	S	T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																					.	.									.	.	.
Template SS confidence
	121	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K
Query Conservation
Alig confidence										.	.	.	.	.																																						.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation										.	.	.	.	.																																						.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence	D	S	T	L	N	Y	Q	A	D	.	.	.	.	.	Y	V	V	Q	S	F	H	T	L	P	A	L	T	M	G	S	V	L	Y	I	H	K	N	A	P	Y	R	E	N	I	I	E	Y	L	S	Y	F	.	.	.	.	.	.	Q	T	S	S	P	S	Y	L	I	M	A	S	L	E	S	A	A	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	G	T		S	.	.	.	.	.										S	S		T	T								T	T		T	T												.	.	.	.	.	.	S		S	S														.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.																																						.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
	195	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.							.	.	.
Predicted Secondary structure																																																.	.	.																						.	.	.	.	.	.
Query SS confidence																																																.	.	.																						.	.	.	.	.	.
Query Sequence	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	G	R	M
Query Conservation																																																.	.	.																						.	.	.	.	.	.
Alig confidence	.	.	.																											.	.	.	.															.	.	.																						.	.	.	.	.	.
Template Conservation	.	.	.																											.	.	.	.
Template Sequence	.	.	.	Q	F	Y	K	T	Y	D	S	T	L	F	F	A	K	R	A	Q	L	I	E	C	L	E	N	K	G	.	.	.	.	F	E	M	L	Q	V	D	D	P	L	K	L	L	I	K	Y	E	G	F	T	G	H	D	I	Q	N	W	F	M	N	A	H	I	Y	L	E	L	A	D	D	Y	Q	A	L	A	I	L
Template Known Secondary structure	.	.	.																										T	.	.	.	.							S	S	T	T							T	T	S												T	T				S				S	S
Template Predicted Secondary structure	.	.	.																											.	.	.	.
Template SS confidence
				259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

	377	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence	C	V	A	G	L	N	T	A	N	.	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence	P	L	W	H	H	D	D	T	Y	L	F	D	S	L	L	R	K	I	E	D	M	I
Template Known Secondary structure					T	T														T
Template Predicted Secondary structure
Template SS confidence
	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions