Job Description P04693 Confidence 99.95% Date Thu Jan 5 10:58:18 GMT 2012 Rank 113 Aligned Residues 329 % Identity 17% Template c2w8wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser Resolution 2.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence																															.	.	.																															.	.	.	.	.	.
Template Conservation																															.	.	.																															.	.	.	.	.	.
Template Sequence		I	L	L	G	T	Y	N	Y	M	G	M	T	F	D	P	D	V	I	A	A	G	K	E	A	L	E	K	F	G	.	.	.	S	G	T	Y	G	S	R	M	L	N	G	T	F	H	D	H	M	E	V	E	Q	A	L	R	D	F	Y	G	T	T	.	.	.	.	.	.	G	A	I	V	F	S	T	G	Y	M	A	N
Template Known Secondary structure					S				T	T		G	G	G																	.	.	.	S				S	B	T	T	T	T	T																	T		S	.	.	.	.	.	.						S
Template Predicted Secondary structure																															.	.	.																															.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	.	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G
Query Conservation																																																																.
Alig confidence									.	.																																			.	.	.	.	.	.	.													.
Template Conservation									.	.																																			.	.	.	.	.	.	.
Template Sequence		L	G	I	I	S	T	L	.	.	A	G	K	G	E	Y	V	I	L	D	A	D	S	H	A	S	I	Y	D	G	C	Q	Q	G	N	A	E	I	V	R	F	R	H	N	.	.	.	.	.	.	.	S	V	E	D	L	D	K	R	L	G	R	L	P	K	E	P	A	K	L	V	V	L	E	G	V	Y	S	M	L	G
Template Known Secondary structure									.	.	S		T	T							T	T												S		S							T	T	.	.	.	.	.	.	.												S		S	S	S								S			T	T	T	T
Template Predicted Secondary structure									.	.																																			.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E
Query Conservation
Alig confidence						.	.	.																															.																													.	.	.
Template Conservation						.	.	.																															.																													.	.	.
Template Sequence		D	I	A	P	.	.	.	L	K	E	M	V	A	V	A	K	K	H	G	A	M	V	L	V	D	E	A	H	S	M	G	F	F	G	P	N	G	.	R	G	V	Y	E	A	Q	G	L	E	G	Q	I	D	F	V	V	G	T	F	S	K	S	V	G	T	V	G	.	.	.	G	F	V	V	S	N	H	P	K	F	E
Template Known Secondary structure						.	.	.											T	T								T	T	T	T	T	T	S	S	T	T	S	.							T	T		T	T	T		S						S	T	T	T	T		S	S		.	.	.								T	T	G	G
Template Predicted Secondary structure						.	.	.																															.																													.	.	.
Template SS confidence
		210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G
Query Conservation
Alig confidence													.	.	.	.																			.	.	.	.	.	.	.	.																													.	.
Template Conservation													.	.	.	.																			.	.	.	.	.	.	.	.																													.	.
Template Sequence		A	V	R	L	A	C	R	P	Y	I	F	.	.	.	.	T	A	S	L	P	P	S	V	V	A	T	A	T	T	S	I	R	K	.	.	.	.	.	.	.	.	L	M	T	A	H	E	K	R	E	R	L	W	S	N	A	R	A	L	H	G	G	L	K	A	M	G	F	R	.	.	L	G	T	E	T	C	D	S	A
Template Known Secondary structure		G										T	.	.	.	.	S	B																	.	.	.	.	.	.	.	.		T	T																						T	T			.	.		S		S	S			S	S
Template Predicted Secondary structure													.	.	.	.																			.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.									.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.												.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.												.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																	.	.	.												.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	.	.	.	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation																	.	.	.												.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																	.	.	.												.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		I	V	A	V	M	L	E	D	Q	E	Q	A	A	M	M	W	Q	A	L	L	D	G	G	L	Y	V	N	M	A	R	P	P	A	T	P	A	G	T	F	L	L	R	C	S	I	C	A	E	H	T	P	A	Q	I	Q	T	V	L	G	M	F	Q	A	A
Template Known Secondary structure								S	S														T	T								T	T	T	S		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions