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Job DescriptionP04693
Confidence99.71%DateThu Jan 5 10:58:18 GMT 2012
Rank229Aligned Residues352
% Identity14%Templatec2qmaB_
PDB info PDB header:transferaseChain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
Resolution1.81 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  AYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGA
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Template Sequence  DNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPA. VAAEAXIAALNQSXDSWDQASSATYVEQKVVNWLCDK
Template Known Secondary structure  SS



TGGGS

TTSTTB
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TT
GGG
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   535....540.........550.........560.........570...... ...580.........590.........600.........610...
 
   87..90.........100.........110....... ..120.........130.........140... ..
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Query Sequence  DHPVLKQQRVATIQTLGGSGALKVGADFLKR. . . . . . . . . . . . . . . . . . YFPESGVWVSDPTWENHVAIFAGAGF. . . EV
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Template Sequence  YDLSEKAD. . . GIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAV
Template Known Secondary structure  TT

TT
...SS



S
TTGGGTTS
TTTS
GGG
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   614.....620. ........630.........640.........650.........660.........670.........680.........690
 
   146...150.........160.........170. ........180.........190.........200.........210.........220..
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Query Sequence  STYPWYDEATNGVRFNDLLATLKTLP. . . ARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM
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Template Sequence  XTVDANAD. . GTXDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD. . . LDFIADXAVKHDXWXHVDGAYGGALILS
Template Known Secondary structure 
B
TT..S
B
TT
BS
TTT

B

...T

TTGGGGGGS
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   691....... .700.........710.........720.........730....... ..740.........750.........760.....
 
   223......230.........240.........250.........260.........270.........280.........290.........300..
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Query Sequence  EEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDE
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Template Sequence  S. . HKSRLKGVERAH. . SISVDFHKLFY. QTISCGALLVND. . . . . . . . . . . . . KSNFKFLLKRFDALKVFXTXQNVG. .
Template Known Secondary structure  T..TGGGGTTGGG
S..TTSTT
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SS
S
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TT
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   766 ...770........ .780......... 790.........800. ........810.........820.....
 
   303......310.........320.........330.........340.........350..... ....360.........370..
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Query Sequence  ALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS. . . . . . . . . . AAQVDRLREEFGVYLIA
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Template Sequence  . . . . . . PKALGDXYDHLLAQTLEVADXIRTND. . . QFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGE
Template Known Secondary structure  ......T
T...T
S

SSS

SSS
TS
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   850.........860.........870..... ....880.........890.........900.........910.........920
 
   373 ......380 .........390......
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Query Sequence  S. . . . . . . GRMCVAG. . LNTANVQRVAKAFAAV
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Template Sequence  TIVDGKTALKFTILNPCLTTSDFESLLSKINXL
Template Known Secondary structure  TT


TT

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   921........930.........940.........950...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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