Phyre 2 alignment of P04693 with c2po3B

Job Description P04693
Confidence 99.96% Date Thu Jan 5 10:58:18 GMT 2012

Rank 100 Aligned Residues 318

% Identity 16% Template c2po3B_

PDB info PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V
Query Conservation
Alig confidence					.	.	.	.	.																								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	V	G	.	.	.	.	.	R	P	N	R	I	D	R	A	R	L	Y	E	R	L	D	R	A	L	D	S	Q	W	L	.	.	.	S	N	G	G	P	L	V	R	E	F	E	E	R	V	A	G	L	A	G	V	R	H	.	.	.	.	.	.	.	.	.	.	A	V	A	T	C	N	A	T	A	G	L	Q	L
Template Known Secondary structure			T	T	.	.	.	.	.																					T			.	.	.	S	S	S																T	S	S		.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure					.	.	.	.	.																								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2021	.	.	.						.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.				.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.											2070	.	.	.	.	.	.	.	.	.	2080	.	.

	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L
Query Conservation
Alig confidence						.	.	.																																	.																	.	.	.	.										.	.
Template Conservation						.	.	.																																	.																	.	.	.	.										.	.
Template Sequence	L	A	H	A	A	.	.	.	G	L	T	G	E	V	I	M	P	S	M	T	F	A	A	T	P	H	A	L	R	W	I	G	L	T	P	V	F	A	D	I	.	D	P	D	T	G	N	L	D	P	D	Q	V	A	A	A	V	.	.	.	.	T	P	R	T	S	A	V	V	G	.	.	V	H	L	W	G	R	P	C
Template Known Secondary structure						.	.	.	T			S						S	S	S		T									T	T								B	.		T	T	T	S	S	B		S	T	T						.	.	.	.		T	T							.	.			G	G	G
Template Predicted Secondary structure						.	.	.																																	.																	.	.	.	.										.	.
Template SS confidence
	2083	.	.	.	.				.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.		2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.					.	.	.	.	2140	.	.	.	.			.	.	.	.	.	2150	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G
Query Conservation
Alig confidence		.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence	A	.	.	.	A	D	Q	L	R	K	V	A	D	E	H	G	L	R	L	Y	F	D	A	A	H	A	L	G	C	A	V	D	G	R	P	A	G	S	L	G	D	.	.	.	.	.	.	.	.	A	E	V	F	S	F	H	A	T	K	A	V	N	A	F	E	G	G	A	V	V	T	D	D	A	D	L	A	A	R	I
Template Known Secondary structure		.	.	.												T								T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.	.	.	.	.	S							T	T	S	S	S			S	S							S
Template Predicted Secondary structure		.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
	2153				.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190									.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.

	271	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence	R	V	L	G	Q	L	K	.	.	.	.	.	.	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence	R	A	L	H	N	F	G	F	D	L	P	G	G	S	P	A	G	G	T	N	A	K	M	S	E	A	A	A	A	M	G	L	T	S	.	.	.	.	.	.	.	.	.	.	L	D	A	F	P	E	V	I	D	R	N	R	R	N	H	A	A	Y	R	E	H	L	A	D	L	P	G	V	L	V	A	D	H	D	R	H
Template Known Secondary structure				T	B	T	T	T	T		T	T			T	T				B		B													.	.	.	.	.	.	.	.	.	.																						T		S		T	T						G	G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2222	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.											.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.

	345	.	.	.	.	350	.	.										.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																														.	.	.	.	.		.	380	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence	Q	R	G	M	F	S	Y	T	.	.	.	.	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N
Query Conservation									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence	G	L	N	N	H	Q	Y	V	I	V	E	I	D	E	A	T	T	G	I	H	R	D	L	V	M	E	V	L	K	A	E	G	V	H	T	R	A	Y	F	S	P	G	C	H	E	L	E	P	Y	R	G	Q	P	H	A	P	L	P	H	T	E	R	L	A	A	R	V	L	S	L	P	T	G	T	A	I	G	D	D	D
Template Known Secondary structure	S	B																S	S												T	T				B		T	T		S		G	G	G	S	T	T	T	T	T	S													T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
	2292	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.

	386	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	R	R	V	A	D	L	L	R	L	C	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	2372	.	.	.	.	.	.	.	2380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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