Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 42 Aligned Residues 363 % Identity 21% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	V	D	A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L
Query Conservation
Alig confidence																																		.	.	.	.	.																					.	.
Template Conservation																																		.	.	.	.	.																					.	.
Template Sequence		A	T	V	S	R	L	R	P	Y	A	T	T	V	F	A	E	M	S	A	L	A	T	R	I	G	A	V	N	L	G	Q	G	.	.	.	.	.	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	.	.	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q
Template Known Secondary structure					G	G	G	G	G	G	S	S												T	T	T				S	S		S	.	.	.	.	.	S		S	S																T	.	.	T			S				T	T
Template Predicted Secondary structure																																		.	.	.	.	.																					.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D
Query Conservation
Alig confidence																			.																.	.
Template Conservation																			.																.	.
Template Sequence		R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	.	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L	.	.	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D
Template Known Secondary structure												T	T	T	S				.																.	.			T	T								S			T	T								T	T												T	T
Template Predicted Secondary structure																			.																.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S
Query Conservation
Alig confidence									.	.																																																									.	.
Template Conservation									.	.																																																									.	.
Template Sequence		A	L	R	R	A	V	T	.	.	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	.	.	L	A	G	F	D	G	M	A	E	R	T	I	T
Template Known Secondary structure									.	.	T	T								S	S		T	T	T																			T	T								T	T	T	T		B		T	T						.	.	G	G	G	S	T	T	T	G	G	G
Template Predicted Secondary structure									.	.																																																									.	.
Template SS confidence
		151	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	K	Q	.	.	.	.	.	.	.	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	.	.	.	.	.	.	D	T	E	D	A	W	V	A	A	L	R	N	S	L	R	A	R
Template Known Secondary structure									S		T	T	T																					.	.	.	.	.	.	.			T	S				T	T										.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.								.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.														.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	.	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N
Query Conservation																																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation														.	.	.	.																																																														.
Template Sequence		R	D	R	L	A	A	G	L	T	E	I	G	.	.	.	.	F	A	V	H	D	S	Y	G	T	Y	F	L	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	.	K	R
Template Known Secondary structure													T	.	.	.	.								B	S	S							G	G	G	T																S						G	G	G	G	S						G	G	G								.	S
Template Predicted Secondary structure														.	.	.	.																																																														.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	T	L	D	E	A	I	R	R	L	S	V	L	A
Template Known Secondary structure													G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions