Job Description P04693 Confidence 99.80% Date Thu Jan 5 10:58:18 GMT 2012 Rank 217 Aligned Residues 283 % Identity 17% Template c2nmpC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase Resolution 2.60 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																.	.																																																															.	.
Query SS confidence																.	.																																																															.	.
Query Sequence		A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	.	.	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	.	.
Query Conservation																.	.																																																															.	.
Alig confidence																.	.																.	.	.	.	.	.	.	.	.	.																	.	.	.																			.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		G	A	P	G	Q	G	F	E	Y	S	R	S	G	N	P	T	R	N	C	L	E	K	A	V	A	A	L	D	G	A	K	.	.	.	.	.	.	.	.	.	.	Y	C	L	A	F	A	S	G	L	A	A	T	V	T	I	T	.	.	.	H	L	L	K	A	G	D	Q	I	I	C	M	D	D	V	Y	G	G	T	N
Template Known Secondary structure		S	S	T	T					B	G	G	G																T	T		S	.	.	.	.	.	.	.	.	.	.						S	S										.	.	.	T	T	S		T	T							S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
				134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210
Predicted Secondary structure		.	.																																																																										.
Query SS confidence		.	.																																																																										.
Query Sequence		.	.	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	.	L	I	P	F
Query Conservation		.	.																																																																										.
Alig confidence		.	.																			.	.	.	.	.	.	.										.	.	.																						.	.	.													.
Template Conservation																						.	.	.	.	.	.	.										.	.	.																						.	.	.
Template Sequence		R	Y	F	R	Q	V	A	S	E	F	G	L	K	I	S	F	V	D	C	S	.	.	.	.	.	.	.	K	I	K	L	L	E	A	A	I	.	.	.	T	P	E	T	K	L	V	W	I	E	T	P	T	N	P	T	Q	K	V	I	D	.	.	.	I	E	G	C	A	H	I	V	H	K	H	G	D	I	I	L	V
Template Known Secondary structure							T	G	G	G	T	T									S	.	.	.	.	.	.	.	S									.	.	.		T	T								S	S		T	T	T						.	.	.									T	T	S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.										.	.	.																						.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	.	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N
Query Conservation																																										.
Alig confidence							.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Template Sequence		V	D	N	T	F	.	.	.	.	.	.	.	.	.	.	M	S	P	Y	F	Q	R	P	L	A	L	G	A	D	I	S	M	Y	S	A	T	K	Y	M	N	G	H	S	D	V	V	M	G	L	V	S	V	N	C	.	.	.	.	.	.	E	S	L	H	N	R	L	R	F	L	Q	N	S	L	G	A	V	P	S	P
Template Known Secondary structure					T	T	.	.	.	.	.	.	.	.	.	.	T							T	T	T	T	T		S						T	T	T	T	T	T		S	S	S											.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190											.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																				.	.	.	350
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	F	S
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		I	D	C	Y	L	C	N	R	G	L	K	T	.	.	.	.	.	.	.	.	.	.	L	H	V	R	M	E	K	H	F	K	N	G	M	A	V	A	Q	F	L	E	S	N	P	W	.	.	.	V	E	K	V	I	Y	P	G	L	P	S	H	P	Q	H	E	L	V	K	R	Q	C	T	G	C	T	G	M	V	T	F
Template Known Secondary structure												T	T	.	.	.	.	.	.	.	.	.	.																					T		T	T	.	.	.							T	T	S	T	T	S	T	T									S	S			S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.											.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																																			.	.	.	.	.	.	380	.			.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	.	.	N	T	A	N	V	Q	R	V	A	K	A	F	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.			.	.
Template Conservation																																																																.
Template Sequence		Y	I	K	G	T	L	Q	H	A	E	I	F	L	K	N	L	K	L	F	T	L	A	E	S	L	G	G	F	E	S	L	A	E	L	P	A	I	M	T	H	A	S	V	L	K	N	D	R	D	V	L	G	I	S	D	T	L	I	R	L	S	V	.	G	L	E	D	E	E	D	L	L	E	D	L	D	Q	A	L	K
Template Known Secondary structure				S	S													S	S	S				S			S	S	S	S						G	G	G	T	T	T	T	T	S									T			T	T							.		S	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		395	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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