Job Description P04693 Confidence 99.94% Date Thu Jan 5 10:58:18 GMT 2012 Rank 125 Aligned Residues 337 % Identity 12% Template c2dr1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	.	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G
Query Conservation																																													.
Alig confidence												.	.	.	.	.	.	.												.	.	.	.												.																	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		K	P	K	Y	K	L	F	T	A	G	.	.	.	.	.	.	.	P	V	A	C	F	P	E	V	L	E	I	.	.	.	.	M	K	V	Q	M	F	S	H	R	S	K	E	Y	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	.	.	.	.	.	.	.	E	V	E	K	G	E	V	L	L	V	P	S	S
Template Known Secondary structure		S			S					S	S	.	.	.	.	.	.	.	S											.	.	.	.	T	T	S					T	T	S																			.	.	.	.	.	.	.	T		S	S	S						S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H
Query Conservation
Alig confidence														.	.																																																																	.
Template Conservation														.	.																																																																	.
Template Sequence		G	T	G	I	M	E	A	S	I	R	N	G	.	.	V	S	K	G	G	K	V	L	V	T	I	I	G	A	F	G	K	R	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L	E	Y	E	P	G	K	A	V	K	P	E	D	L	D	D	A	L	R	K	N	P	D	V	E	A	V	T	I	T	Y	N	.	E
Template Known Secondary structure														.	.	S		T	T								S	S													T	T										T	T																T	T								S		.
Template Predicted Secondary structure														.	.																																																																	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.										230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.
Query Sequence		N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	.	.	.	.	.	.	.	.	.	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E
Query Conservation																																																.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		T	S	T	G	V	L	N	P	.	.	.	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	D	K	W	G	L	D	V	V	F	S	S	S	Q	K	A	F	G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E	I	A	E	K	M	P
Template Known Secondary structure		T	T	T	T					.	.	.											T	T								T	T	T	B	T	T	B				T	T	T	T	T		S						T	T	S	T	T				S	S															T	T		T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		E	R	G	W	Y	F	D	I	P	L	Y	V	K	Y	L	K	E	K	E	.	.	.	.	.	.	.	.	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	.	.	.	.	I	I	E	K	M	G	G	K	E	K	W	L	E	M	Y	E	K	R	A	K	M	V	R	E	G	V	R	E	I	G
Template Known Secondary structure		T			S	T	T													S	.	.	.	.	.	.	.	.	S		S	S																.	.	.	.					T	T																							T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.									.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																						.	.	.	.	.	.	.	.							.
Query SS confidence																				.	.	.																						.	.	.	.	.	.	.	.							.
Query Sequence		P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	G	R	M	C	V	A	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																				.	.	.																						.	.	.	.	.	.	.	.							.
Alig confidence																				.	.	.																						.	.	.	.	.	.	.	.							.
Template Conservation
Template Sequence		L	D	I	L	A	E	P	G	H	E	S	P	T	I	T	A	V	L	T	P	P	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	V	K	E	K	T	F	R	I	G	H	M	G	Y	M	K	F	E	D	I	Q	E	M	L	D	N	L	R	E	V	I
Template Known Secondary structure				B	S	S		T	T		B		S	S								T	T													T	T								G	G	G	T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions