Job Description P04693 Confidence 99.97% Date Thu Jan 5 10:58:18 GMT 2012 Rank 88 Aligned Residues 344 % Identity 15% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure					.																																																	.	.	.	.	.
Query SS confidence					.																																																	.	.	.	.	.
Query Sequence		G	D	P	.	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	.	.	.	.	.	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L
Query Conservation					.																																																	.	.	.	.	.
Alig confidence					.															.								.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																				.								.	.	.	.	.	.	.
Template Sequence		R	D	E	A	L	F	E	L	I	A	L	E	E	K	R	Q	R	E	.	G	L	E	L	I	A	S	.	.	.	.	.	.	.	E	N	F	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A
Template Known Secondary structure																				.	S					T	T	.	.	.	.	.	.	.													T	S	G	G	G	G							T	T			S	S	S
Template Predicted Secondary structure																				.								.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.								.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.															.
Query SS confidence																																																								.	.	.															.
Query Sequence		F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	.	.	.	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	.	D	E	A	T	N	G	V	R
Query Conservation																																																								.	.	.															.
Alig confidence										.	.	.	.	.																				.	.																					.	.	.															.
Template Conservation										.	.	.	.	.																				.	.
Template Sequence		K	A	L	F	G	A	A	W	.	.	.	.	.	A	N	V	Q	P	H	S	G	S	Q	A	N	M	A	V	Y	M	A	L	.	.	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	D
Template Known Secondary structure						T		S		.	.	.	.	.						S	S													.	.			T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S
Template Predicted Secondary structure										.	.	.	.	.																				.	.
Template SS confidence
		79	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A
Query Conservation
Alig confidence																.	.														.	.	.	.	.																																									.	.	.	.	.	.
Template Conservation																.	.														.	.	.	.	.																																									.	.	.	.	.	.
Template Sequence		L	E	E	V	R	R	L	A	L	E	H	R	P	K	.	.	V	I	V	A	G	A	S	A	Y	P	R	F	W	.	.	.	.	.	D	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	Y	A	H	.	.	.	.	.	.
Template Known Secondary structure															S	.	.							S	S			S			.	.	.	.	.													T								T	T	T						T	T	S	S				T	T	T		S	.	.	.	.	.	.
Template Predicted Secondary structure																.	.														.	.	.	.	.																																									.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I
Query Conservation
Alig confidence												.	.																			.	.	.	.	.																														.	.	.	.	.
Template Conservation												.	.																			.	.	.	.	.																														.	.	.	.	.
Template Sequence		V	V	T	S	T	T	H	K	T	L	.	.	R	G	P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	.	.	.	.	.	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	.	.	.	.	.	Q	P	E	F	K	E	Y	S	R	L	V
Template Known Secondary structure							S	S	G	G	G	.	.				S							S								.	.	.	.	.						T	T	T	T		S	S																	T	.	.	.	.	.	S
Template Predicted Secondary structure												.	.																			.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.						.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370															.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.							.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.							.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	.	G	M	F	S	Y	T	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G	R	M	C	V	A
Query Conservation																													.							.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.									.							.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	.	.	.	.	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P
Template Known Secondary structure														T	T	T	.	.	.	.				G	G	G	S		S	S	S							G	G	G	T												T	T	T									T	T			S		T	T	T		S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		G	L	N	T	.	.	.	.	.	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L
Template Known Secondary structure						T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions