Phyre 2 alignment of P04693 with c1z7dE

Job Description P04693
Confidence 99.89% Date Thu Jan 5 10:58:18 GMT 2012

Rank 179 Aligned Residues 319

% Identity 11% Template c1z7dE_

PDB info PDB header:transferase Chain: E: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence																	.	.														.	.	.	.																												.	.	.	.	.	.
Template Conservation																	.	.														.	.	.	.																												.	.	.	.	.	.
Template Sequence	Y	D	F	L	S	A	Y	S	S	V	N	Q	G	H	C	H	.	.	P	N	I	L	N	A	M	I	N	Q	A	K	N	.	.	.	.	L	T	I	C	S	R	A	F	F	S	V	P	L	G	I	C	E	R	Y	L	T	N	L	L	G	Y	D	.	.	.	.	.	.	K	V	L	M	M	N	T	G	A	E	A	N
Template Known Secondary structure			S	S					T	T	T	T		B	T		.	.												T	T	.	.	.	.		S				T	T	S																	T		S	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																	.	.														.	.	.	.																												.	.	.	.	.	.
Template SS confidence
	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A
Query Conservation
Alig confidence								.	.																		.	.	.	.	.	.	.											.	.	.	.	.	.	.												.
Template Conservation								.	.																		.	.	.	.	.	.	.											.	.	.	.	.	.	.												.
Template Sequence	E	T	A	Y	K	L	C	.	.	R	K	W	G	Y	E	V	K	K	I	P	E	N	M	A	K	I	.	.	.	.	.	.	.	V	V	C	F	S	K	V	P	Y	D	.	.	.	.	.	.	.	D	L	E	A	L	E	E	E	L	K	D	.	P	N	V	C	A	F	I	V	E	P	I	Q	G	E	A	G	V	I
Template Known Secondary structure								.	.							T	S				T	T					.	.	.	.	.	.	.									T	T	.	.	.	.	.	.	.										T	S	.	T	T								S	S	B	S	T	T	T		B
Template Predicted Secondary structure								.	.																		.	.	.	.	.	.	.											.	.	.	.	.	.	.												.
Template SS confidence
	116	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A
Query Conservation
Alig confidence																																																.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence	V	P	S	D	N	Y	L	Q	G	V	Y	D	I	C	K	K	Y	N	V	L	F	V	A	D	E	V	Q	T	G	L	G	R	T	G	K	L	L	C	V	H	H	Y	N	V	K	P	D	.	.	.	.	.	.	V	I	L	L	G	K	A	L	S	G	G	H	Y	P	I	S	A	V	L	A	N	.	.	.	.	.	.
Template Known Secondary structure				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S	.	.	.	.	.	.						G	G	G	G	T	T	S	S									.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M
Query Conservation
Alig confidence	.																																.	.	.	.	.	.	.	.
Template Conservation	.																																.	.	.	.	.	.	.	.
Template Sequence	.	D	D	I	M	L	V	I	K	P	G	E	H	G	S	T	Y	G	G	N	P	L	A	A	S	I	C	V	E	A	L	N	.	.	.	.	.	.	.	.	V	L	I	N	E	K	L	C	E	N	A	E	K	L	G	G	P	F	L	E	N	L	K	R	E	L	K	D	S	K	I	V	R	D	V	R	G	K	G	L
Template Known Secondary structure	.					T	T											T	T														.	.	.	.	.	.	.	.					T	T																				T	T	T		T	T								T	T
Template Predicted Secondary structure	.																																.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

	349	350	.	.						.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																						.	.	.	.						.
Query SS confidence					.	.	.	.	.																						.	.	.	.						.
Query Sequence	F	S	Y	T	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation					.	.	.	.	.																						.	.	.	.						.
Alig confidence					.	.	.	.	.																						.	.	.	.						.
Template Conservation
Template Sequence	L	C	A	I	E	F	K	N	E	L	V	N	V	L	D	I	C	L	K	L	K	E	N	G	L	I	T	R	D	V	H	D	K	T	I	R	L	T	P	P	L	C	I	T	K	E	Q	L	D	E	C	T	E	I	I	V	K	T	V
Template Known Secondary structure								T	T	T													T	T							T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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