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Job DescriptionP04693
Confidence100.00%DateThu Jan 5 10:58:18 GMT 2012
Rank62Aligned Residues344
% Identity15%Templatec1d2fB_
PDB info PDB header:transferaseChain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG
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Template Sequence  SKVVLLPFTIS. . . . . DMDFATAPCIIEALNQRLMH. . GVFGYSRWKN. DEFLAAIAHWFSTQHYTAIDSQTVVY. . GPS
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SS.....S
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   5....10..... ....20.........30..... ....40..... ....50.........60.........70. ...
 
   104.....110.........120.........130.........140.........150.. .......160.........170.........180..
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Query Sequence  GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYD. EATNGVRFNDLLATLKTLPARSIVLLHPCC
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Template Sequence  VIYMVSELIRQW. . SETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK. . PECKIMLLCSP
Template Known Secondary structure  ..S
TT
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   96...100....... ..110.........120.........130.........140.........150.........160 .........170.
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM
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Template Sequence  QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS. . . NVARGDWALLTSGSKSFNIPALTGAYGIIE
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TTT




TT

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   172.......180.........190.........200.........210........ .220.........230.........240........
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  CEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYL
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Template Sequence  NSSSRDA. . . . . YLSALKGRDGLSSPSVLALTAHIAAYQQG. . . . . APWLDALRIYLKDNLTYIADKMNAAFPE. . LNWQ
Template Known Secondary structure  S.....TTS


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   249250..... ....260.........270.........280.... .....290.........300.........310.. ....
 
   343......350...... ...360.........370... ......380.........390.......
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Query Sequence  LNQRGMFSYTGLSA. . . . . . AQVDRLREEFGVYLIAS. . . . . . . . . . GRMCVAGLNTANVQRVAKAFAAVM
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Template Sequence  IPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG. CPRSKLEKGVAGLINAI
Template Known Secondary structure 

SB
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GGG


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GGGG
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   317..320.........330.........340.........350.........360......... 370.........380......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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