Job Description P04693 Confidence 99.80% Date Thu Jan 5 10:58:18 GMT 2012 Rank 215 Aligned Residues 303 % Identity 15% Template c1c4kA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	.	I	F	A	G	A	G	F	E	V	S
Query Conservation																																																																							.
Alig confidence																					.	.	.	.	.	.	.	.																						.	.																				.
Template Conservation																					.	.	.	.	.	.	.	.																						.	.
Template Sequence		I	H	E	G	P	A	V	A	A	E	K	H	A	A	R	V	Y	N	A	.	.	.	.	.	.	.	.	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	.	.	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V
Template Known Secondary structure		T	T	B	T													T	T		.	.	.	.	.	.	.	.	S						S	S														.	.			T	T							T	T										T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.									.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure										.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		T	Y	P	W	Y	D	E	A	.	.	.	.	.	.	.	.	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	.	.	.	.	.	.	.	.	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F
Query Conservation										.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.											.	.									.	.	.
Template Conservation																																																					.	.									.	.	.
Template Sequence		Y	L	Q	T	N	R	N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	.	.	T	Y	D	G	T	I	Y	N	.	.	.	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E
Template Known Secondary structure									T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B	.	.		T	T	S					.	.	.									G	G	G	B	S
Template Predicted Secondary structure																																																					.	.									.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																																														.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																																														.	.	.	.	.	.	.
Query Sequence		L	D	I	A	Y	Q	G	F	G	A	G	.	.	.	.	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	.	.	.	.	.	.	.	E	A	A	G	R	V	L	G	Q	L	K	A	T
Query Conservation													.	.	.	.																																														.	.	.	.	.	.	.
Alig confidence													.	.	.	.																												.	.																	.	.	.	.	.	.	.
Template Conservation																																												.	.
Template Sequence		F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	.	.	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F
Template Known Secondary structure					T	T			G	G	G	S	S	G	G	G	G	G	G		T	T	S						T	T	S													.	.	S	S			T	T									G	G	G	T	T	S	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		M	S	T	S	P	F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	.	.	.	.	.	.	.	.	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A
Template Known Secondary structure		S		S	S																	S	.	.	.	.	.	.	.	.																									T	T		S	S			S	S		S			T	T			G	G	G	S						T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.									.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
																													337	.	.	340	.	.	.	.	.	.	.	.							.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.							.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																											.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																											.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	F	D	Y	L	L	N	Q	R	G	M	.	.	.	.	.	.	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	R	M	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	I	D	Y	W	R	F	E	K	G	A	K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	I	P	E	K	S	D	L	N	S	I	L	F	L	M	T
Template Known Secondary structure		T		G	G	G	G	B			T	T		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S														T	T				S				S	S
Template Predicted Secondary structure
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		P	.	A	E	T	P	A	K	M	N	N	L	I	T	Q	L	L	Q	L
Template Known Secondary structure		T	.	T
Template Predicted Secondary structure			.
Template SS confidence
		545		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions