Job Description P0A8Y3 Confidence 93.60% Date Thu Jan 5 11:08:58 GMT 2012 Rank 145 Aligned Residues 135 % Identity 13% Template c3ef0A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	I	F	D	L	G	N	V	I	V	D	I	D	F	N	R	V	L	G	A	W	S	D	L	T	R	I	P	L	A	S	L	K	K	S	F	H	M	G	E	A	F	H	Q	H	E	R	G	E	I	S	D	E	A	F	A	E	A	L	C	H	E	M	A	L	P	L	S	Y	E	Q	F	S	H	G	W	Q	A	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	I	V	D	L	D	Q	T	I	I	H	A	T	V	D	P	T	V	G	E	W	M	S	D	P	G	N	V	N	Y	D	V	L	R	D	V	R	S	F	N	L	Q	E	G	P	S	G	Y	T	S	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								B	T	T	T							T							T		T	T	S	T	T	T	G	G	G	T	T									T	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		F	V	A	L	R	P	E	V	I	A	I	M	H	K	L	R	E	Q	G	H	R	V	V	V	L	S	N	T	N	R	L	H	T	T	F	W	P	E	E	Y	P	E	I	R	D	A	A	.	D	H	I	Y	L	S	Q	D	L	G	M	R	K	P	E	A	R	I	Y	Q	H	V	L	Q	A	E	G	F	S	P	S	D
Query Conservation																																																	.
Alig confidence																	.																																.																.	.	.	.	.
Template Conservation																	.																																																.	.	.	.	.
Template Sequence		Y	I	K	F	R	P	G	L	A	Q	F	L	Q	K	I	.	S	E	L	Y	E	L	H	I	Y	T	M	G	T	K	A	Y	A	K	E	V	A	K	I	I	D	P	T	G	K	L	F	Q	D	R	V	L	S	R	D	D	S	G	S	L	A	Q	K	.	.	.	.	.	S	L	R	R	L	F	P	C	D	T	S	M
Template Known Secondary structure							T	T									.		T	T								S	S														T	T	S		S	S	S	S					T	T	T	S	S		S	S			.	.	.	.	.		G	G	G	T		S	S			T	T
Template Predicted Secondary structure																	.																																																.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.
		161	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	F	F	D	D	N	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	V	I	D	D	R	G	D
Template Known Secondary structure							S		S	G
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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