Job Description P39352 Confidence 99.98% Date Thu Jan 5 11:59:40 GMT 2012 Rank 3 Aligned Residues 387 % Identity 12% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		V	N	P	P	Q	R	K	A	L	F	S	A	W	L	G	Y	V	F	D	G	F	D	F	M	M	I	F	Y	I	L	H	I	.	I	K	A	D	L	G	I	T	D	I	Q	A	T	L	I	G	T	V	A	F	I	A	R	P	I	G	G	G	F	F	G	A	M	A	D	K	Y	G	R	K	P	M	M	M	W	A	I
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		M	Y	Y	L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I
Template Known Secondary structure							S																																																					T												T	T		T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		F	I	Y	S	V	G	T	G	L	S	G	I	A	T	N	L	Y	M	L	A	V	C	R	F	I	V	G	L	G	M	S	G	E	Y	A	C	A	S	T	Y	A	V	E	S	W	P	K	.	.	.	.	.	.	N	L	Q	S	K	A	S	A	F	L	V	S	G	F	S	V	G	N	I	I	A	A	Q	I	I	P	Q
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I
Template Known Secondary structure							T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.
Query Sequence		F	A	E	V	Y	G	W	R	N	S	F	F	I	G	L	L	P	V	L	L	V	L	W	I	R	K	S	A	P	E	S	Q	E	W	I	E	D	K	Y	K	D	K	S	T	F	L	S	V	.	.	.	.	.	.	.	.	.	F	R	K	P	H	L	S	I	S	M	I	V	F	L	V	C	F	C	L	F	G	A	N
Query Conservation																																																		.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D
Template Known Secondary structure																											S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	I	N	G	L	L	P	S	Y	L	A	D	N	G	V	N	T	V	V	I	S	T	L	M	T	I	A	G	L	G	T	L	T	G	T	I	F	F	G	F	V	G	D	K	I	G	V	K	K	A	F	V	V	G	L	I	T	S	F	I	F	L	C	P	L	F	F	I	S	V	K	N	S	S	L	I	G	L	C
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	.	.	A	T	S	A	L	E	V	V	I	L
Template Known Secondary structure									T	T	S	S	S																									T	T																														T	.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	F	G	L	M	F	T	N	L	G	I	A	G	L	V	P	K	F	I	Y	D	Y	F	P	T	K	L	R	G	L	G	T	G	L	I	Y	N	L	G	A	.	T	G	G	M	A	A	P	V	L	A	T	Y	I	S	G	Y	Y	G	L	G	V	S	L	F	I	V	T	V	A	F	S	A	L	L	I	L	L	V	G
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F
Template Known Secondary structure																								S		G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		392	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	I	P	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	S	G	P	G
Template Known Secondary structure			S			S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions