Job Description P39352 Confidence 3.41% Date Thu Jan 5 11:59:40 GMT 2012 Rank 27 Aligned Residues 206 % Identity 10% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	Q	V	N	P	P	Q	R	K	A	L	F	S	A	W	L	G	Y	V	F	D	G	F	D	F	M	M	I	F	Y	I	L	H	I	I	K	A	D	L	G	I	T	D	I	Q	A	T	L	I	G	T	V	A	F	I	A	R	P	I	G	G	G	F	F	G	A	M	A	D	K	Y	G	R	K	P	M	M	M	W
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.
Template Sequence		R	A	Q	P	I	E	S	D	A	T	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	.	.	.	.	.	.	.	.	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K	A	S	I	V
Template Known Secondary structure			T	S																													T	.	.	.	.	.	.	.	.	T	S		G	G	G																											T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		A	I	F	I	Y	S	V	G	T	G	L	S	G	I	A	T	N	L	Y	M	L	A	V	C	R	F	I	V	G	L	G	M	S	G	E	Y	A	C	A	S	T	Y	A	V	.	.	.	.	E	S	W	P	K	N	L	Q	S	K	A	S	A	F	L	V	S	G	F	S	V	G	N	I	I	A	A	Q	I	I	P	Q
Query Conservation																																														.	.	.	.
Alig confidence																																														.	.	.	.
Template Conservation
Template Sequence		D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G
Template Known Secondary structure							T	T							T	T	T	T	T	T	S																						T									S					T	T						T	T														S	T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		162			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		F	.	.	A	E	V	Y	G	W	R	N	S	F	F	I	G	L	L	P	V	L	L	V	L	W	I	R	K	S	A	P	E	S	Q	E	W	I	E	D	K	Y	K	D	K	S	T	F	L	S	V	F	R	K	P	H	L	S	I	S	M
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y	E	D	S	H	E	F	I	H	L	A	G	P	E	D	E	H	K	A	E	R	L	V	L
Template Known Secondary structure																														T	T				S	S	T	T		G	G	G	T	S	S	S				G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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