Return to main results Retrieve Phyre Job Id

Job DescriptionP45756
Confidence99.56%DateThu Jan 5 12:03:32 GMT 2012
Rank37Aligned Residues78
% Identity18%Templated1lbua1
SCOP infoPGBD-like PGBD-like Peptidoglycan binding domain, PGBD
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   395....400.........410.........420.... .....430.........440.........450.........460.........470..
Predicted Secondary structure 
















..
























Query SS confidence 





























. .















































Query Sequence  SPEGESTITRDSSEEEILWLETMLNRALHI. . STEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHLWQVAGESAY
Query Conservation 
         
     
  
   
      ..           
   
  

   

  


 
  

  
        
Alig confidence 





























..















































Template Conservation         
  
  
  
  

  
   
        

 

  
  

  

   

  

 

  
   
         
Template Sequence  CYTWSGTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQDDDCT
Template Known Secondary structure  S



S
B
TT
BSTTT
S
TT




SSB

TTS

SS
B


TTS
Template Predicted Secondary structure 







































Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions