Job Description P45756 Confidence 98.87% Date Thu Jan 5 12:03:32 GMT 2012 Rank 90 Aligned Residues 202 % Identity 15% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	R	E	V	I	L	S	W	L	C	E	K	R	Q	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	.	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R
Template Known Secondary structure		S															T	S		S								T	T	S	S																S	.							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	V	E	R	D	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		K	K	G	K	L	E	L	.	.	.	.	.	.	.	.	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E
Template Known Secondary structure									.	.	.	.	.	.	.	.	T	T	T	S						T	G	G	G	S															S					B	T																S	S								T	T	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
				144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.																	.	.													.	.	.	.	.																					.
Query SS confidence		.	.																	.	.													.	.	.	.	.																					.
Query Sequence		.	.	F	K	K	Q	G	I	E	L	V	S	I	G	R	L	T	E	.	.	H	E	L	K	A	S	I	L	E	G	Q	N	.	.	.	.	.	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	.	R	G	D	R	R	K	L	A	L	A	G	E	T	I	R	L	L	Q	Q	A	E
Query Conservation		.	.																	.	.													.	.	.	.	.																					.
Alig confidence		.	.																	.	.													.	.	.	.	.																					.
Template Conservation
Template Sequence		D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C	E	G	E
Template Known Secondary structure								T	S								G	G	G	S	T	T																	T	T						B										T				T	T															T			S	S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions