Job Description P45756 Confidence 99.38% Date Thu Jan 5 12:03:32 GMT 2012 Rank 60 Aligned Residues 201 % Identity 14% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																															.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	I	.	.	.	.	.	.	.	.	K	G	P	E	L	L	T	M	W	F	G	E	S	E	.	.	.	.	.	.	.	.	.	.	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	.	.	P	C	V
Template Known Secondary structure								T	T	S													T	T							.	.	.	.	.	.	.	.										T	T	T		T	.	.	.	.	.	.	.	.	.	.							T	T	T	T	T	T	T		.	.	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.									.	.	.	.	.	.	.	550	.	.	.	.	.	.											.	.	.	560	.	.	.	.	.	.	.	.	.	570			.	.	.
		102	.	.	.	.	.	.																.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.								.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.								.	.
Query Sequence		I	I	I	E	N	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	.	.	V	E	R	D	F	K	K	.	.	Q	G	I	E	L	V	S	I	G	R	L	T	E	H	E	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.								.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.								.	.
Template Conservation
Template Sequence		L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R
Template Known Secondary structure					S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																	.																		.	.	.	.	.
Query SS confidence																																	.																		.	.	.	.	.
Query Sequence		K	A	S	I	L	E	G	Q	N	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	R	G	.	D	R	R	K	L	A	L	A	G	E	T	I	R	L	L	Q	Q	.	.	.	.	.	A	E	Q	T	S	V	F	T	A	K	Q	W	R	M	I	Y	R	I	L	G	D	N	R	P	R	K
Query Conservation																																	.																		.	.	.	.	.
Alig confidence																				.	.	.											.																		.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	.	.	.	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S	V	S	D	N
Template Known Secondary structure									T	T	T	S		B		S	S			.	.	.					T	T	T		S	S															T	T														B										T	T				S	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.				.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
		237	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	L	A	V	V	M	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	R	K	Y	E	M	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		751	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions