Job Description P45756 Confidence 99.46% Date Thu Jan 5 12:03:32 GMT 2012 Rank 54 Aligned Residues 194 % Identity 14% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Y	V	G	E	S	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	.	.
Template Known Secondary structure			S						S	S	T	T	S													T	T								T	T	T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T																	T		.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.																			.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																.	.	.																																									.	.	.	.
Query SS confidence																.	.	.																																									.	.	.	.
Query Sequence		C	P	L	I	I	I	E	N	A	H	L	N	H	R	.	.	.	R	I	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	V	E	R	D	F	K	K	Q	G	I	E	L	V	.	.	.	.	S	I	G	R	L	T	E	H	E	L	K	A	S	I	L	E	G	Q	N
Query Conservation																.	.	.																																									.	.	.	.
Alig confidence																.	.	.																																									.	.	.	.
Template Conservation
Template Sequence		P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	A	D	R	L	A	I	L	K	T	I	T	K
Template Known Secondary structure		S							T		T	T	T				T	T											T			S	T	T									S		G	G	G	S						S	T	T	S	S								S														T	T
Template Predicted Secondary structure
Template SS confidence
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																				.	.					.
Query SS confidence																				.	.					.
Query Sequence		I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	.	.	L	C	R	G	.	D	R	R	K	L	A	L	A	G	E	T	I	R	L	L	Q	Q	A	E	Q	T	S	V	F	T	A	K	Q	W	R	M	I	Y	R	I	L	G	D	N
Query Conservation																				.	.					.
Alig confidence																				.	.					.
Template Conservation
Template Sequence		N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure		T	T	B	T	T	B	B		T	T								T		S	G	G	G	S																									B										T	T
Template Predicted Secondary structure
Template SS confidence
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions