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Job DescriptionP45756
Confidence97.99%DateThu Jan 5 12:03:32 GMT 2012
Rank143Aligned Residues179
% Identity12%Templatec2gnoA_
PDB info PDB header:replicationChain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40... ......50.........60.........70.........80..
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Query Sequence  VILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDK. . . . HRRVITLSLVVSWQGKAAWIVTDDNAAEQGCRDSAWTRD
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Template Sequence  ETLKRIIEKSE. GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS. . . . . . . .
Template Known Secondary structure  T
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   14.....20.... .....30.........40.........50.........60.........70.........80....
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  EMAGQLLHALHRTDSRCPLIIIENAHLNHRRILDDLQRAISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEHEL
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Template Sequence  . . . . . . . . . . . PELYTRKYVIVHDCERXTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRD
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SSSSSTTGGGB
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   85....90.........100.........110.........120.........130.........140.........150...
 
   163......170.........180.........190.........200......
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Query Sequence  KASILEGQNIDQPDLLLTARVLKRIALLCRGDRRKLALAGETIR
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Template Sequence  LVKEKIG. DLWEELPLLERDFKTALEAYKLGAEKLSGLXESLKV
Template Known Secondary structure  T.T
GGGGT
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   154.....160 .........170.........180.........190......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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