Job Description P45756 Confidence 99.56% Date Thu Jan 5 12:03:32 GMT 2012 Rank 36 Aligned Residues 185 % Identity 14% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		R	E	V	I	L	S	W	L	C	E	K	R	Q	T	W	R	L	.	.	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R	D
Query Conservation																			.	.
Alig confidence																			.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	G	I	D	V	V	R
Template Known Secondary structure										G	G	G	T	T	T	T											T	T	S	S														T	T			T	T	T						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T	T	S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																.	80	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	V	E	R	D	F	K	K	Q	G	I	E	L	V	S	I	G	R	L	T	E	H	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M
Template Known Secondary structure										S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	S	S	S	S								S		G	G	G	S						T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	I	L	E	G	Q	N	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	R	G	D	R	R	K	L	A	L	A	G	E	T	I	R
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		K	K	R	L	L	E	I	C	.	.	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A
Template Known Secondary structure										.	.		T	T	T			B													T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		167	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions