Job Description P45756 Confidence 99.54% Date Thu Jan 5 12:03:32 GMT 2012 Rank 41 Aligned Residues 190 % Identity 18% Template c1z6tC_ PDB info PDB header:apoptosis Chain: C: PDB Molecule:apoptotic protease activating factor 1; PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp Resolution 2.21 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.
Predicted Secondary structure																																					.	.	.									.																					.	.	.	.	.	.
Query SS confidence																																					.	.	.									.																					.	.	.	.	.	.
Query Sequence		R	E	V	I	L	S	W	L	C	E	K	R	Q	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	.	.	.	Q	K	D	K	H	R	R	V	.	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	.	.	.	.	.	.	N	A	A	E	Q	G	C
Query Conservation																																					.	.	.									.																					.	.	.	.	.	.
Alig confidence																																					.	.	.									.																					.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	A	I	Q	Q	K	L	S	K	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	S	L	L	E	G	C	F	P	G	G	V	H	W	V	S	V	G	K	Q	D	K	S	G	L	L	M	K	L	Q	N	L	C	T	R	L	D	Q	D	E	S	F
Template Known Secondary structure										T	T	S	T	T	S										T	T	S	S																				T	T									S																		T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	V	E	R	D	F	K	K	Q	G	I	E	L	V	S	I
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.																					.
Template Conservation																																					.	.	.	.	.	.	.	.																					.
Template Sequence		S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	.	.	.	.	.	.	.	.	S	W	V	L	K	A	F	D	S	Q	C	Q	I	L	L	T	T	R	D	K	.	S	V	T	D	S	V	M	G	P	K	Y	V	V	P	V	E
Template Known Secondary structure			S	S				S															T		T	T											.	.	.	.	.	.	.	.						T	T		S	S								S		G	.	G	G	G	T	T			S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.																					.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	L	T	E	H	E	L	K	A	S	I	L	E	G	Q	N	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	R	G	D	R	R	K	L	A	L	A	G	E	T	I	R
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	K	K	A	D	L	.	.	.	P	E	Q	A	H	S	I	I	K	E	C	K	G	S	P	L	V	V	S	L	I	G	A	L	L	R
Template Known Secondary structure		S	S															T	S		G	G	G	S	.	.	.		T										T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions