Job Description P45756 Confidence 99.45% Date Thu Jan 5 12:03:32 GMT 2012 Rank 56 Aligned Residues 189 % Identity 17% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.											.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	T	R	R	E	V	I	L	S	W	L	C	E	.	.	.	.	.	.	.	.	.	.	K	R	Q	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A
Query Conservation																.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				G	G	G	S		T	T					S						S	S	S	S	S													T	T	S										S	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.															.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	G	C	R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G	R	P
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	K	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I
Template Known Secondary structure		.	.	.	.	.		S	S			S															T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	S			T	T								S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		D	R	K	V	E	R	D	F	K	K	Q	G	I	E	L	V	S	I	G	R	L	T	E	H	E	L	K	A	S	I	L	E	G	Q	N	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	R	G	.	D	R	R	K	L	A	L	A	G	E	T	I	R	L	L	Q
Query Conservation																																																											.
Alig confidence																																				.	.																						.
Template Conservation																																				.	.
Template Sequence		P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	M	F	K	L	H	L	.	.	G	T	T	Q	N	S	L	T	E	A	D	F	R	E	L	G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure		T	T	T	S							T																								.	.	T	T			B													T		T	T															T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions