Job Description P45756 Confidence 98.10% Date Thu Jan 5 12:03:32 GMT 2012 Rank 127 Aligned Residues 128 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																																										.	.																	.
Query SS confidence															.	.	.	.	.	.	.																																										.	.																	.
Query Sequence		R	E	V	I	L	S	W	L	C	E	K	R	Q	.	.	.	.	.	.	.	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	.	.	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	.
Query Conservation															.	.	.	.	.	.	.																																										.	.																	.
Alig confidence															.	.	.	.	.	.	.																																										.	.																	.
Template Conservation
Template Sequence		Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V
Template Known Secondary structure									T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
				75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.																																					.	.					.	.
Query SS confidence		.	.																																					.	.					.	.
Query Sequence		.	.	R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	.	.	H	R	R	I	.	.	L	D	D	L	Q	R	A	I	S	L	I	P	D	G	Q	F	L	L	I	G
Query Conservation		.	.																																					.	.					.	.
Alig confidence		.	.																							.	.													.	.					.	.
Template Conservation																										.	.
Template Sequence		Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	.	.	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I
Template Known Secondary structure					S	S				T	T													T	T	.	.		S									S			S	S	T																		S
Template Predicted Secondary structure																										.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions