Job Description P45756 Confidence 99.06% Date Thu Jan 5 12:03:32 GMT 2012 Rank 81 Aligned Residues 203 % Identity 17% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	R	E	V	I	L	S	W	L	C	E	K	R	Q	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S
Template Known Secondary structure		S														T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		D	E	M	A	G	Q	L	L	H	A	L	H	R	T	D	S	R	C	P	L	I	I	I	E	N	A	H	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	S	L	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	.	.	.	V	E	R	D	F	K	K
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence									.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		K	E	G	F	F	E	L	.	.	.	.	.	.	.	.	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E
Template Known Secondary structure		B							.	.	.	.	.	.	.	.	T	T	T	S						S	G	G	G																S					B	T			S													S	S								T	T	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		147	.						.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure				.	.	.	.	.												.	.														.	.	.	.	.																				.
Query SS confidence				.	.	.	.	.												.	.														.	.	.	.	.																				.
Query Sequence		Q	G	.	.	.	.	.	I	E	L	V	S	I	G	R	L	T	E	.	.	H	E	L	K	A	S	I	L	E	G	Q	N	I	.	.	.	.	.	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	.	R	G	D	R	R	K	L	A	L	A	G	E	T	I	R	L	L	Q	Q	A	E
Query Conservation				.	.	.	.	.												.	.														.	.	.	.	.																				.
Alig confidence				.	.	.	.	.												.	.														.	.	.	.	.																				.
Template Conservation
Template Sequence		D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L	F	S	E	G	K
Template Known Secondary structure								T	T								G	G	G																				T	T																	S			T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions