Job Description P45756 Confidence 99.03% Date Thu Jan 5 12:03:32 GMT 2012 Rank 84 Aligned Residues 166 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	Q	T	W	R	L	C	Y	L	L	G	E	A	G	S	G	K	T	W	L	A	Q	Q	L	Q	K	D	K	H	R	R	V	I	T	L	S	L	V	V	S	W	Q	G	K	A	A	W	I	V	T	D	D	N	A	A	E	Q	G	C	R	D	S	A	W	T	R	D	E	M	A	G	Q	L	L	H	A	L	H	R
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	F	P	F	I	K	I	C	S	P	D	K	M	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K
Template Known Secondary structure		S	S		S									S	T	T	S	S															S							G	G	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																			T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.																		.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.											.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.
Query Sequence		T	D	S	R	C	P	L	I	I	I	E	N	A	H	.	.	.	.	.	.	.	.	.	.	L	N	H	R	R	I	L	D	D	L	Q	R	A	I	S	L	.	.	I	P	D	G	Q	F	L	L	I	G	R	P	D	R	K	.	.	.	V	E	R	D	F	K	K	Q	G	I	E	L	V	S	I	G	R	L	T	E
Query Conservation																.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.
Alig confidence				.	.											.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.
Template Conservation				.	.
Template Sequence		S	Q	.	.	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T
Template Known Secondary structure		S	S	.	.													T	T		B	T	T	T	T	B													T	T				S	T	T										S								T	T	G	G	G	T	S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		595	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		H	E	L	K	A	S	I	L	E	G	Q	N	I	D	Q	P	D	L	L	L	T	A	R	V	L	K	R	I	A	L	L	C	R	G	D	R	.	.	.	.	.	R	K	L	A	L	A	G	E	T	I
Query Conservation																																						.	.	.	.	.
Alig confidence														.	.	.	.	.	.																			.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		G	E	Q	L	L	E	A	L	E	L	L	G	.	.	.	.	.	.	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure													T	.	.	.	.	.	.		S													T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.							.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions