Phyre 2 alignment of P32057 with d1pswa

Job Description P32057
Confidence 92.45% Date Thu Jan 5 11:49:04 GMT 2012

Rank 67 Aligned Residues 316

% Identity 11% Template d1pswa_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase ADP-heptose LPS heptosyltransferase II

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence	M	K	I	L	V	Y	G	I	N	Y	S	P	E	L	T	G	I	G	K	Y	T	G	E	M	V	E	W	L	A	A	Q	.	.	G	H	E	V	R	V	I	T	A	P	P	Y	Y	P	Q	W	Q	V	G	E	N	Y	S	A	W	R	Y	K	R	E	E	G	A	A	T	V	W	R	C	P	L	Y	V	P	K	Q	P
Query Conservation																																.	.
Alig confidence									.	.	.	.																				.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	X	K	I	L	V	I	G	P	.	.	.	.	S	W	V	G	D	X	X	X	S	Q	S	L	Y	R	T	L	Q	A	R	Y	P	Q	A	I	I	D	V	X	A	P	A	W	C	R	P	L	L	S	R	X	P	E	V	N	E	A	I	P	X	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	S	S																		S	T	T									G	G	G					T	T		T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.					.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	T	L	K	R	L	L	H	L	G	S	F	A	V	S	S	F	F	P	L	M	A	Q	R	R	W	K	P	D	R	I	I	G	V	V	P	T	L	F	C	A	P	G	M	R	L	L	A	K	L	S	G	A	R	T	V	L	H	I	Q	D	Y	E	V	D	A	M	L	G	L	G	L	A	G	K	G	K	G	G	K
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	I	G	E	R	R	K	L	G	H	S	L	R	E	K	R	Y	D	R	A	Y	V	L	P	N	S	F	K	S	A	L	V	P	L	F	A	G	I	P	H	R	T	G	W	R	G	E	X	R	Y	G	L	L	N	D	V	R	V	L	D	K	E	A	W	P	L	X	V	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	T	T		S						S			S	G	G	G						T	T		S							T	T	T		T	T	T		T							T	T	T			S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	A	Q	L	A	T	A	F	E	R	S	G	L	H	N	V	D	N	V	S	T	I	S	R	S	M	M	N	K	A	I	E	K	G	V	A	A	E	N	V	I	F	F	P	N	W	S	E	I	A	R	F	Q	H	V	A	D	A	D	V	D	A	L	R	N	Q	L	D	L	P	D	N	K	K	I	I	L	Y	S	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	Y	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Y	D	K	G	I	X	R	T	A	Q	D	L	P	Q	P	L	L	W	P	Q	L	Q	V	S	E	G	E	K	S	Y	T	C	N	Q	F	S	L	S	S	E	R	P	X	I	G	F	C	P	G	A
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		G	G	G		S	S	G	G	G	S		S	S																				T	T			S	S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	134	.	.	.																									.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

	239	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence	N	I	G	E	K	Q	G	.	.	L	E	N	V	I	E	A	A	D	R	L	R	D	E	P	L	I	F	A	I	V	G	Q	G	G	G	K	A	R	L	E	K	M	A	Q	Q	R	G	L	R	N	M	Q	F	F	P	L	Q	S	Y	D	A	L	P	A	L	L	K	M	G	D	C	H	L	V	V	Q	K	R	G	A
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence	E	F	G	P	A	K	R	W	P	H	Y	H	Y	A	E	L	A	K	Q	L	I	D	E	G	Y	Q	V	V	L	F	G	S	A	K	D	H	E	A	G	N	E	I	L	A	A	L	N	T	E	Q	Q	A	W	C	R	N	L	A	G	E	T	Q	L	D	Q	A	V	I	L	I	A	A	C	K	A	I	V	T	N	D
Template Known Secondary structure	T	T		G	G	G	S																T	T									G	G	G									T	T	S						T	T					T	T	T	S											T	S	S						S
Template Predicted Secondary structure
Template SS confidence
	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.											.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence	A	D	A	V	L	P	S	K	L	T	N	I	L	A	V	G	G	N	A	V	I	T	A	E	A	Y	T	E	L	G	Q	L	C	E	T	F	P	G	I	A	V	C	V	E	P	E	.	.	.	.	.	.	.	.	.	.	S	V	E	A	L	V	A	G	I	R	Q	A	L	L	L	P	K
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence	S	.	.	.	.	.	G	L	X	H	V	A	A	A	L	N	R	P	L	V	A	L	Y	G	P	S	S	P	D	F	T	P	P	L	S	H	K	A	R	V	I	R	L	I	T	G	E	G	Y	H	Q	S	L	I	D	I	T	P	Q	R	V	L	E	E	L	N	A	L	L	L	Q	E	E
Template Known Secondary structure	S	.	.	.	.	.									T	T								S	S	S		T	T	S	S					T	T						S	S											T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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