Job Description P32057 Confidence 100.00% Date Thu Jan 5 11:49:04 GMT 2012 Rank 11 Aligned Residues 356 % Identity 13% Template c3oy2A_ PDB info PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	L	V	Y	G	I	N	Y	S	P	E	L	T	G	I	G	K	Y	T	G	E	M	V	E	W	L	A	A	Q	G	H	E	V	R	V	I	T	A	P	P	Y	Y	P	Q	W	Q	V	G	E	N	Y	S	A	W	R	Y	K	R	E	E	G	A	A	T	V	W	R	C	P	L	Y	V	P	K	Q	P	S	T
Query Conservation
Alig confidence													.																	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	L	I	I	V	G	A	H	S	S	.	V	P	S	G	Y	G	R	V	M	R	A	I	V	P	R	I	.	S	K	A	H	E	V	I	V	F	G	I	H	A	F	G	R	S	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	I	E	E	F	D	A	Q	T
Template Known Secondary structure											T	T	.			S														.	T	T	T	S								S			S			S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure													.																	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																							.	.	.	50	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	L	L	H	L	G	S	F	A	V	S	S	F	F	P	L	M	A	Q	R	R	W	K	P	D	R	I	I	G	V	V	P	T	L	F	C	A	P	G	M	R	L	L	A	K	L	S	G	A	R	T	V	L	H	I	Q	D	Y	E	V	D	A	M	L	G	L	G	L	A	G	K	G	K	G	G	K	V	A
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		A	E	H	V	R	G	L	N	E	Q	G	F	Y	Y	S	G	L	S	E	F	I	D	V	H	K	P	D	I	V	M	I	Y	N	D	P	I	V	I	G	N	Y	L	L	A	M	G	K	C	S	H	R	T	K	I	V	L	Y	V	D	L	V	S	K	N	I	R	E	N	L	W	W	I	F	.	.	.	.	.	.	.
Template Known Secondary structure						T	T			S	T	T																S																		G	G	G			S												S	B	S			G	G	G	G	G	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	T	A	F	E	R	S	G	L	H	N	V	D	N	V	S	T	I	S	R	S	M	M	N	K	A	I	E	K	G	V	A	A	E	N	V	I	F	F	P	N	W	S	E	I	A	R	F	Q	H	V	A	D	A	D	V	D	A	L	R	N	Q	L	D	L	P	D	N	K	K	I	I	L	Y	S	G	N	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	S	H	P	K	V	V	G	V	M	A	M	S	K	C	W	I	S	D	I	C	N	Y	G	C	K	V	P	I	N	I	V	S	H	F	.	.	.	.	.	.	.	V	D	T	K	T	I	Y	D	A	R	K	L	V	G	L	S	E	Y	N	D	D	V	L	F	L	N	M	N	R	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	G		T	T							S	S	T									T	T			S									.	.	.	.	.	.	.							T	T					T	T		G	G	G	T	T	S							S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template SS confidence
											130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290													.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	K	Q	G	L	E	N	V	I	E	A	A	D	R	L	R	D	E	P	L	I	F	A	I	V	G	Q	G	G	G	K	A	R	L	E	K	M	A	Q	Q	R	G	L	R	N	M	Q	F	F	.	.	.	.	.	.	.	.	.	.	.	.	P	L	Q	S	Y	D	A	L	P	A	L	L	K	M	G	D	C	H
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	R	K	R	L	D	I	Y	V	L	A	A	A	R	F	I	S	K	Y	P	D	A	K	V	R	F	L	C	N	S	H	H	E	S	K	F	D	L	H	S	I	A	L	R	E	L	V	A	S	G	V	D	N	V	F	T	H	L	N	K	I	M	I	N	R	T	V	L	T	D	E	R	V	D	M	M	Y	N	A
Template Known Secondary structure		S	G	G	G	T																T	T											T	T		S															T		S							T	T						S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																		.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	V	Q	K	R	G	A	A	D	A	V	L	P	S	K	L	T	N	I	L	A	V	G	G	N	A	V	I	T	A	E	A	Y	T	E	L	G	Q	L	C	E	T	F	P	G	I	A	V	C	V	E	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	E	A	L	V	A	G	I
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.
Template Sequence		C	D	V	I	V	N	C	S	S	G	E	G	F	G	L	C	S	A	E	G	A	V	L	G	K	P	L	I	I	S	A	V	G	G	A	D	.	.	.	D	Y	F	S	G	D	C	V	Y	K	I	K	P	S	A	W	I	S	V	D	D	R	D	G	I	G	G	I	E	G	I	I	D	V	D	D	L	V	E	A	F
Template Known Secondary structure			S							S			S	S									T	T	T													.	.	.			S		T	T	T	S												T	T	T		S	S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		372	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		R	Q	A	L	L	L	P	.	.	.	K	H	N	T	V	A	R	E	Y	A	E	R	T	L	D	K	E	N	V	L	R	Q	F	I	N	D	I	R
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		T	F	F	K	D	E	K	N	R	K	E	Y	G	K	R	V	Q	D	F	V	K	T	K	P	T	W	D	D	I	S	S	D	I	I	D	F	F	N
Template Known Secondary structure				T	T	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.