Job Description P32057 Confidence 42.50% Date Thu Jan 5 11:49:04 GMT 2012 Rank 360 Aligned Residues 331 % Identity 17% Template c1y6gB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	L	V	Y	G	I	N	Y	S	P	E	L	T	G	I	G	K	Y	T	G	E	M	V	E	W	L	A	A	Q	G	H	E	V	R	V	I	T	A	P	P	Y	Y	P	Q	W	Q	V	G	E	N	Y	S	A	W	R	Y	K	R	E	E	G	A	A	T	V	W	R	C	P	L	Y	V	P	K	Q	P	S	T
Query Conservation
Alig confidence													.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	I	C	I	F	M	A	R	G	L	.	E	G	C	G	V	T	K	F	S	L	E	Q	R	D	W	F	I	K	N	G	H	E	V	T	L	V	Y	A	K	D	K	S	F	T	R	T	S	S	H	D	H	K	S	F	S	I	P	V	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T			.		S	S																T	T									T	T	S			T	T	S	S	S	S			T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.		.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		L	K	R	L	L	H	L	G	S	F	A	V	S	S	F	F	P	L	M	A	Q	R	R	W	K	P	D	R	I	I	G	V	V	P	T	L	F	C	.	.	.	.	.	.	.	A	P	G	M	R	L	L	A	K	L	S	G	A	R	T	V	L	H	I	Q	D	Y	E	V	D	A	M	L	G	L	G	L	A	G	K
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.																																	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	K	E	Y	D	K	A	L	K	L	V	N	D	C	D	I	L	I	I	N	S	V	P	A	T	S	V	Q	E	A	T	I	N	N	Y	K	K	L	L	D	N	I	K	P	S	I	R	V	V	V	Y	Q	H	D	H	S	V	L	S	L	R	R	N	L	G	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.												T	S	S	S									B	T	T	S														S	S		S	S	S										S					T	T	B	S	S	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.	.
Template SS confidence
														1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		G	K	G	G	K	V	A	Q	L	A	T	A	F	E	R	S	G	L	H	N	V	D	N	V	S	T	I	S	.	.	.	R	S	M	M	N	K	A	I	E	K	G	V	A	A	E	N	V	I	F	F	P	N	W	S	E	I	A	R	F	Q	H	V	A	D	A	D	V	D	A	L	R	N	Q	L	D	L	P	D	N
Query Conservation																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	T	V	R	R	A	D	V	I	F	S	H	S	D	N	G	D	F	N	K	V	L	M	K	E	W	Y	P	E	A	P	T	V	Y	N	F	Q	P	P	M	D	I	V	K	V	R	S	T	Y	W	K	D	V	S	E	I	.	.	.	.	.	.	.	.	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.									S					S		T	T	S	T	T	T	T	T						S													B													G	G	G		.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.
Template SS confidence
															1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.									.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	I	I	L	Y	S	G	N	I	G	E	K	Q	G	L	E	N	V	I	E	A	A	D	R	L	R	D	E	P	L	I	F	A	I	V	G	Q	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	A	R	L	E	K	M	A	Q	Q	R	G	L	R	N	M	Q	F	F	P	L	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	I	N	R	W	I	G	R	T	T	T	W	K	G	F	Y	Q	M	F	D	F	H	E	K	F	L	K	P	A	G	K	S	T	V	M	E	G	L	E	R	S	P	A	F	I	A	I	K	E	K	G	I	P	Y	E	Y	Y	G	N	R	E	I	D	K	M	N	L	A	P	N	Q	P	A	Q	I	L	D	C	Y
Template Known Secondary structure											S	S	G	G	G												T	T	G	G	G	T												T							T	T	T								T	T	S	G	G	G				S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.										.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																											.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	D	A	L	P	A	L	L	K	M	G	D	C	H	L	V	V	Q	K	R	G	A	A	D	.	.	A	V	L	P	S	K	L	T	N	I	L	A	V	G	G	N	A	V	I	.	.	.	.	.	.	.	.	.	T	A	E	A	Y	T	E	L	G	Q	L	C	E	T	F	P	G	I	A	V	C	V	E	P	E
Query Conservation																											.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																											.	.																				.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		I	N	S	E	M	L	E	R	M	S	K	S	G	F	G	Y	Q	L	S	K	L	N	Q	K	Y	L	Q	R	S	L	E	Y	T	H	L	E	L	G	A	C	G	T	I	P	V	F	W	K	S	T	G	E	N	L	K	F	R	V	D	N	T	P	.	.	.	.	L	T	S	H	D	S	G	I	I	W	F	D	E	N
Template Known Secondary structure												T												G	G	G		S	S												T	T	S					B								B		S	S	S			B	.	.	.	.	S	S	S	S							B		S	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		1276	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.					.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	A	L	V	A	G	I	R	Q	A	L	L	L	P	K	H	N	T	V	A	R	E	Y	A	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	E	S	T	F	E	R	I	K	E	L	S	S	D	R	A	L	Y	D	R	E	R	E	K	A	Y	E
Template Known Secondary structure		S													S
Template Predicted Secondary structure
Template SS confidence
		1352	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.