Job Description P31471 Confidence 99.86% Date Thu Jan 5 11:48:00 GMT 2012 Rank 46 Aligned Residues 242 % Identity 12% Template c3ed1E_ PDB info PDB header:hydrolase receptor Chain: E: PDB Molecule:gibberellin receptor gid1; PDBTitle: crystal structure of rice gid1 complexed with ga3 Resolution 1.90 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		N	P	Q	R	Q	V	N	S	S	M	I	L	V	P	G	S	Y	L	D	T	R	S	V	A	H	G	D	L	I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	.	.	.	G	R	S	A	I	D
Query Conservation																																																																									.	.	.
Alig confidence																																						.															.	.																			.	.	.
Template Conservation																																						.															.	.
Template Sequence		R	A	D	G	T	F	E	R	D	L	G	E	Y	L	D	R	R	V	P	A	N	A	R	P	L	E	G	V	S	S	F	D	H	I	I	D	.	Q	S	V	G	L	E	V	R	I	Y	R	A	D	A	.	.	P	A	A	E	P	F	P	V	I	I	F	F	H	G	G	S	F	V	H	S	S	A	S	S	T	I	Y
Template Known Secondary structure			T	T	S		B									S		B					S	S		B	T	T	B									.	T	T	T	T											.	.			S	S											S	T	T	T	S			T	T	B
Template Predicted Secondary structure																																						.															.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	I	P	Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	L	C	R	R	F	V	K	L	S	.	.	.	.	.	.	.	K	G	V	V	V	S	V	N	Y	R	R	A	P	E	H	R	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	Y	D	D	G	W	T	A	L	K	W	V	M	S	Q	P	F	M	R	S	A	Q	A	R
Template Known Secondary structure													.	.	.	.	.	.	.	T	S										T	T	T	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T		T	T	T	B				B
Template Predicted Secondary structure													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	L	A	G	L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	.	.	.	H	L	E	S	F	G	W	L	A	T	F	S	G	V	T	T	T	T	V	P	D	E	G	V	A	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	L	S	G	D	S	S	G	G	N	I	A	H	H	V	A	V	R	A	A	D	E	G	V	K	V	C	G	N	I	L	L	N	A	M	F	G	G	T	E	R	T	E	S	E	R	R	L	D	G	K	Y	F	V	T	L	Q	D	R	D	W	Y	W	K	A	Y	L	P	E	D	A	D	R	D	H	P	A	C	N
Template Known Secondary structure																								T	T				S												S	S									T	T	T	S	S														S		T	T			T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																							.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																							.	.	.	.	.	.
Query Sequence		.	.	.	.	N	D	P	A	A	I	N	Q	Q	L	R	N	F	T	V	V	V	G	D	K	D	V	V	T	G	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	F	D	Y	Q	E	Y	P	G	L	N	H	E	M	.	.	.	.	.	.	D	V	W	R	P	A	Y	A	A	F	V	Q	K	L
Query Conservation		.	.	.	.																																																							.	.	.	.	.	.
Alig confidence		.	.	.	.																										.																													.	.	.	.	.	.
Template Conservation																															.
Template Sequence		P	F	G	P	N	G	R	R	L	G	G	L	P	F	A	K	S	L	I	I	V	S	G	L	D	L	T	C	D	.	R	Q	L	A	Y	A	D	A	L	R	E	D	G	H	H	V	K	V	V	Q	C	E	N	A	T	V	G	F	Y	L	L	P	N	T	V	H	Y	H	E	V	M	E	E	I	S	D	F	L
Template Known Secondary structure		T	T	S	T	T					T	T	S											T	T	S	T	T			.												T	T									T	T			T	T	G	G	G	S	S		S
Template Predicted Secondary structure																															.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions