Job Description P31471 Confidence 99.30% Date Thu Jan 5 11:48:00 GMT 2012 Rank 125 Aligned Residues 174 % Identity 16% Template c2qs9A_ PDB info PDB header:structural protein Chain: A: PDB Molecule:retinoblastoma-binding protein 9; PDBTitle: crystal structure of the human retinoblastoma-binding2 protein 9 (rbbp-9). nesg target hr2978 Resolution 1.72 Å

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		175	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		P	V	.	L	Y	F	Y	H	G	F	G	D	T	G	R	S	A	I	D	Q	G	R	I	P	Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M
Query Conservation				.
Alig confidence				.																.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	K	A	V	I	V	P	G	N	G	G	G	D	V	T	T	H	.	.	G	W	Y	G	W	V	K	K	E	L	.	.	.	E	K	I	P	G	F	Q	C	L	A	K	N	X	P	D	P	I	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S	S	S		T	T	T	S	.	.	T	T									.	.	.	T	T	S	T	T									S	S	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G	R	A	L	A	G	L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	H	L	E	S	F	G	W	L	A	T	F	S	G	V	T	T	T	T	V	P	D	E	G	.	.	.	.	V	A	A	R	L	N	D	P	A	A	I	N	Q	Q	L
Query Conservation																																																															.	.	.	.
Alig confidence		.																																								.	.																				.	.	.	.
Template Conservation		.																																								.	.
Template Sequence		.	R	E	S	I	W	L	P	F	X	E	T	E	L	H	C	D	E	K	T	I	I	I	G	H	S	S	G	A	I	A	A	X	R	Y	A	E	T	H	R	.	.	V	Y	A	I	V	L	V	S	A	Y	T	S	D	L	G	D	E	N	E	R	A	S	G	Y	F	T	R	P	W	Q	W	E	K	I	K	A	N	C
Template Known Secondary structure		.												T	S				T	T							T													S		.	.		S						S			S	S		T	T							T	S	T	T	S	S
Template Predicted Secondary structure		.																																								.	.
Template SS confidence
			51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		R	N	F	T	V	V	V	G	D	K	D	V	V	T	G	.	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	F	D	Y	Q	E	Y	P	G	L	N	H	E	M	D	V	W	R	P	A	Y	A	A	F	V	Q	K	L	F	K
Query Conservation																	.
Alig confidence																	.											.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		P	Y	I	V	Q	F	G	S	T	D	D	P	F	L	P	W	K	E	Q	Q	E	V	A	D	R	L	.	.	.	.	.	E	T	K	L	H	K	F	T	D	C	G	H	F	Q	N	T	E	F	H	E	L	I	T	V	V	K	S	L	L	K
Template Known Secondary structure		S								T	T		S	S	S													.	.	.	.	.	T							S	S		T	T	S		S	S														T
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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