Job Description P31471 Confidence 99.47% Date Thu Jan 5 11:48:00 GMT 2012 Rank 109 Aligned Residues 211 % Identity 15% Template c2qmqA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution Resolution 1.70 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	G	R	S	A	I	D	Q	G	R	I	P	Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A
Query Conservation
Alig confidence										.			.												.	.	.				.	.																														.	.	.	.	.
Template Conservation										.			.												.	.	.				.	.																														.	.	.	.	.
Template Sequence		H	T	H	S	V	E	T	P	.	Y	G	.	S	V	T	F	T	V	Y	G	T	P	K	.	.	.	P	K	R	.	.	P	A	I	F	T	Y	H	D	V	G	L	N	Y	K	S	C	F	Q	P	L	F	R	F	G	D	M	Q	E	I	.	.	.	.	.	I	Q	N	F	V	R	V	H	V	D	A	P	G	M	E
Template Known Secondary structure									T	.	T		.								S				.	.	.	T	T		.	.									T	T												T	S							.	.	.	.	.		T	T	S								T	T	T	S
Template Predicted Secondary structure										.			.												.	.	.				.	.																														.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.		.	.		10	.	.	.	.	.	.	.	.	.	20				.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G	R	A	L	A	G	L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	H	L	E	S	F	G	W	L	A	T	F	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		E	G	A	P	V	F	P	L	G	Y	Q	Y	P	S	.	.	.	.	.	.	.	.	.	.	.	L	D	Q	L	A	D	M	I	P	C	I	L	Q	Y	L	.	.	.	.	.	N	F	S	T	I	I	G	V	G	V	G	A	G	A	Y	I	L	S	R	Y	A	L	N	H	P	D	T	V	E	G	L	V	L	I	N
Template Known Secondary structure		T	T						T	T						.	.	.	.	.	.	.	.	.	.	.							T									.	.	.	.	.	T										T														G	G	G								S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120												.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.																																																											.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	T	T	T	T	V	P	D	E	G	V	A	A	R	L	N	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	P	N	A	K	G	W	M	D	W	A	A	H	K	L	T	G	L	T	S	S	I	P	D	M	I	L	G	H	L	F	S	Q	E	E	L	S	G	N	S	E	L	I	Q	K	Y	R	G	I	I	Q	H	A	P	N	L	E	N	I	E	L	Y	W	N	S	Y	N	N	R	R	D	L	N	F	E	R	G	G	E
Template Known Secondary structure																				T	T	S											S							T	T													T		T	T													T						S			T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		N	Q	Q	L	R	N	F	T	V	V	V	G	D	K	D	V	V	T	G	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	F	D	Y	Q	E	Y	P	G	L	N	H	E	M	D	.	.	.	.	.	V	W	R	P	A	Y	A	A	F	V	Q
Query Conservation																																																			.	.	.	.	.
Alig confidence																											.	.	.																						.	.	.	.	.
Template Conservation																											.	.	.
Template Sequence		T	T	L	K	C	P	V	M	L	V	V	G	D	Q	A	P	H	E	D	A	V	V	E	C	N	.	.	.	S	K	L	D	P	T	Q	T	S	F	L	K	M	A	D	S	G	G	Q	P	Q	L	T	Q	P	G	K	L	T	E	A	F	K	Y	F	L	Q
Template Known Secondary structure						S								T	T	S	T	T									.	.	.			S		G	G	G							T	T		T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions