Phyre 2 alignment of P31471 with c2bklB

Job Description P31471
Confidence 99.98% Date Thu Jan 5 11:48:00 GMT 2012

Rank 29 Aligned Residues 325

% Identity 13% Template c2bklB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity

Resolution 1.5 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence	V	N	A	D	N	S	V	T	F	R	Y	F	A	P	G	A	K	N	V	S	V	V	V	G	V	P	V	P	D	N	I	H	P	M	T	K	D	E	A	G	V	W	S	W	R	T	P	I	L	K	G	N	L	Y	E	Y	F	F	N	V	D	G	V	R	.	.	.	.	S	I	D	T	G	T	A	M	T	N	P	Q
Query Conservation																																																																	.	.	.	.
Alig confidence																																															.																		.	.	.	.
Template Conservation																																															.
Template Sequence	V	P	E	D	S	S	A	S	L	L	S	V	S	I	V	G	G	H	L	S	L	E	Y	L	K	D	A	T	S	E	V	R	V	A	T	L	K	G	K	P	V	R	T	V	Q	L	.	P	G	V	G	A	A	S	N	L	M	G	L	E	D	L	D	D	A	Y	Y	V	F	T	S	F	T	T	P	R	Q	I	Y	K
Template Known Secondary structure					S	S										T	T									T	T									T	T										.	S	S	S	S						B	S		T	T		S									T	T
Template Predicted Secondary structure																																															.
Template SS confidence
	314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	Q	V	N	S	S	M	I	L	V	P	G	S	Y	L	D	T	R	S	V	A	H	G	D	L	I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	G	R	S	A	I	D	Q	G	R	I	P	Q
Query Conservation
Alig confidence																																		.																	.
Template Conservation																																		.																	.
Template Sequence	T	S	V	S	T	G	K	S	E	L	W	A	K	V	D	V	P	M	N	P	E	Q	Y	Q	V	E	Q	V	F	Y	A	S	K	.	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	.	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P
Template Known Secondary structure			T	T	T												S			G	G	G											T	.	T	S											T	T			.		S	S												T	T									G	G	G
Template Predicted Secondary structure																																		.																	.
Template SS confidence
	393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G	R	A	L	A	G	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Sequence	W	L	D	A	.	.	.	.	.	.	.	.	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	K	A	W	H	D	A	G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	.	.	.	.	.	.	.	.	.	.	K	Y	T	Q	P	K	R	L	A	I	Y	G	G
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	T									T	T	S	S	T	T							T	T	S	G	G	G	T																	T	.	.	.	.	.	.	.	.	.	.	T	S			G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
	471	.	.	.									.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.											520	.	.	.	.	.	.	.	.	.	530	.	.

	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.																					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	H	L	E	S	F	G	W	L	A	T	F	S	G	V	T	T	T	T	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	V	A	A	R	L	N	D	P	A	A	I	N	Q	Q	L	R	.	.	N	F	T	V	V	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y	H	L	F	G	S	G	R	T	W	I	P	E	Y	G	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A
Template Known Secondary structure	T														G	G	G		S						S					T	T	T	G	G	G	S	T	T	G	G	G	G							T	T	S												G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
	533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.

	337	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																	.	.	.
Query SS confidence									.																	.	.	.
Query Sequence	G	D	K	D	V	V	T	G	.	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	.	.	.	F	D	Y	Q	E	Y	P	G	L	N	H	E	M	D	V	W	R	P	A	Y	A	A	F	V	Q	K	L	F
Query Conservation									.																	.	.	.
Alig confidence									.																	.	.	.
Template Conservation
Template Sequence	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N	P	A	T	A	L	L	R	I	E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y
Template Known Secondary structure		T	T		S	S	S		T												T	S	T	T			S								T	T		B	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
	613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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