Job Description P31471 Confidence 100.00% Date Thu Jan 5 11:48:00 GMT 2012 Rank 21 Aligned Residues 225 % Identity 16% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	G	R	.	.	.	S	A	I	D	Q	G	R	I	P	Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E
Query Conservation																																															.	.	.
Alig confidence																													.																		.	.	.													.	.	.	.	.	.	.	.
Template Conservation																													.																																	.	.	.	.	.	.	.	.
Template Sequence		K	E	E	I	K	K	L	E	V	D	E	I	T	L	W	Y	K	M	I	L	P	P	Q	F	D	R	S	.	K	K	Y	P	L	L	I	Q	V	Y	G	G	P	C	S	Q	S	V	R	S	V	F	A	V	N	W	I	S	Y	L	A	S	.	.	.	.	.	.	.	.	K	E	G	M	V	I	A	L	V	D	G	R
Template Known Secondary structure											T	T											T	T			S	S	.	S												T	T	B																		.	.	.	.	.	.	.	.	T	T										T
Template Predicted Secondary structure																													.																																	.	.	.	.	.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.									.	.	.	.	.	.	570	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G	R	A	L	A	G	L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	H	L	E	S	F	G	W	L	A
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	A	F	Q	G	D	K	L	L	Y	A	V	Y	R	K	L	G	V	Y	E	V	E	D	Q	I	T	A	V	R	K	F	I	E	M	.	.	.	.	.	.	.	.	.	.	G	F	I	D	E	K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	S	S	L	A	L	A	S	G	T	G	L	F	K	C	G	I
Template Known Secondary structure		T	B	S	S	S						G	G	G	T	T		T	T																T	T	.	.	.	.	.	.	.	.	.	.	S													T											T	T	S	S	S			S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610											.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.																	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.
Query Sequence		T	F	S	G	V	T	T	T	T	V	P	D	E	G	V	A	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	P	A	A	I	N	Q	Q	L	.	R	N	F	T	V	V	V	G	D	K	D	V	V	T	G	.	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	F	D
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.
Template Conservation
Template Sequence		A	V	A	P	V	S	S	W	E	Y	Y	A	S	V	Y	T	E	R	F	M	G	L	P	T	K	D	D	N	L	E	H	Y	K	N	S	T	V	M	A	R	A	E	Y	F	R	N	V	D	Y	L	L	I	H	G	T	A	D	D	N	V	H	F	Q	N	S	A	Q	I	A	K	A	L	V	N	A	Q	V	D	F	Q
Template Known Secondary structure				S					T	T	T	S	B											S	S	T	T	T	T							T		S	G	G	G	G	G	G	G	T	T	S								T	T		S	S	S		T													T	T
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		Y	Q	E	Y	P	G	L	N	H	E	M	D	.	.	V	W	R	P	A	Y	A	A	F	V	Q	K	L
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		A	M	W	Y	S	D	Q	N	H	G	L	S	G	L	S	T	N	H	L	Y	T	H	M	T	H	F	L
Template Known Secondary structure						T	T			T	T			T
Template Predicted Secondary structure
Template SS confidence
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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