Job Description P31471 Confidence 99.96% Date Thu Jan 5 11:48:00 GMT 2012 Rank 32 Aligned Residues 316 % Identity 12% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		Q	V	N	A	D	N	S	V	T	F	R	Y	F	A	P	G	A	K	N	V	S	V	V	V	G	V	P	V	P	D	N	I	H	P	M	T	K	D	E	A	G	V	W	S	W	R	T	P	I	L	K	G	N	L	Y	E	Y	F	F	N	V	D	G	V	R	.	.	.	.	S	I	D	T	G	T	A	M	T	N	P
Query Conservation																																																																			.	.	.	.
Alig confidence																																																	.																		.	.	.	.
Template Conservation																																																	.
Template Sequence		T	V	V	P	E	S	K	D	N	L	E	S	V	G	I	A	G	N	R	L	F	A	S	Y	I	H	D	A	K	S	Q	V	L	A	F	D	L	D	G	K	P	A	G	A	V	S	L	.	P	G	I	G	S	A	S	G	L	S	G	R	P	G	D	R	H	A	Y	L	S	F	S	S	F	T	Q	P	A	T	V	L
Template Known Secondary structure								S	S									B	T									T	T									T	T	S							B		.	S	S	S										B	T		S									T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	Q	V	N	S	S	M	I	L	V	P	G	S	Y	L	D	T	R	S	V	A	H	G	D	L	I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	G	R	S	A	I	D	Q	G	R	I	P
Query Conservation
Alig confidence																																				.																	.	.	.
Template Conservation																																				.																	.	.	.
Template Sequence		A	L	D	P	A	T	A	K	T	T	P	W	E	P	V	H	L	T	F	D	P	A	D	F	R	V	E	Q	V	F	Y	P	S	K	.	D	G	T	K	V	P	M	F	I	V	R	R	K	D	A	K	.	.	.	G	P	L	P	T	L	L	Y	G	Y	G	G	F	N	V	A	L	T	P	W	F	S	A	G	F	M
Template Known Secondary structure					T	T	T	T						S					S	S		G	G	G											T	.	T	S											T	T			.	.	.	S												T	T
Template Predicted Secondary structure																																				.																	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.				.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K	D	A	D	G	R	A	L	A	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	I	.	.	.	.	.	.	.	.	D	S	G	G	A	F	A	L	A	N	L	R	G	G	G	E	Y	G	D	A	W	H	D	A	G	R	R	D	K	K	Q	N	V	F	D	D	F	I	A	A	G	E	W	L	I	A	N	.	.	.	.	.	.	.	.	.	.	G	V	T	P	R	H	G	L	A	I	E	G
Template Known Secondary structure					.	.	.	.	.	.	.	.	T	T	T									T	T	S	S	T	T							T	T	S	G	G	G	T																	T	.	.	.	.	.	.	.	.	.	.	T	S	S		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		512	.	.									.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.											.	.	.	.	.	.	.	.	570	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.																					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	H	L	E	S	F	G	W	L	A	T	F	S	G	V	T	T	T	T	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	V	A	A	R	L	N	D	P	A	A	I	N	Q	Q	L	R	.	.	N	F	T	V	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		G	S	N	G	G	L	L	I	G	A	V	T	N	Q	R	P	D	L	F	A	A	A	S	P	A	V	G	V	M	D	M	L	R	F	D	Q	F	T	A	G	R	Y	W	V	D	D	Y	G	Y	P	E	K	E	A	D	W	R	V	L	R	R	Y	S	P	Y	H	N	V	R	S	G	V	D	Y	P	A	I	L	V	T
Template Known Secondary structure			T														G	G	G		S						S					T	T	S	G	G	G	S	T	T	G	G	G	G							T	T	S									T	T		G	G	G				T	T	S
Template Predicted Secondary structure
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		336	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure											.																.	.	.
Query SS confidence											.																.	.	.
Query Sequence		V	G	D	K	D	V	V	T	G	.	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	.	.	.	N	F	D	Y	Q	E	Y	P	G	L	N	H	E	M	D	V	W	R	P	A	Y	A	A	F	V
Query Conservation											.																.	.	.
Alig confidence											.																.	.	.													.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		T	A	D	T	D	D	R	V	V	P	G	H	S	F	K	Y	T	A	A	L	Q	T	A	A	I	G	P	K	P	H	L	I	R	I	E	P	I	D	K	Q	.	.	.	.	I	E	E	T	A	D	V	Q	A
Template Known Secondary structure				S			S	S	S		T													S				S	S													.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.					.	.	.	.	.	.	700	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions