Job Description P31471 Confidence 99.98% Date Thu Jan 5 11:48:00 GMT 2012 Rank 28 Aligned Residues 325 % Identity 14% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.
Predicted Secondary structure																																																			.	.	.	.															.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.															.	.	.	.	.	.	.	.
Query Sequence		N	A	D	N	S	V	T	F	R	Y	F	A	P	G	A	K	N	V	S	V	V	V	G	V	P	V	P	D	N	I	H	P	M	T	K	D	E	A	G	V	W	S	W	R	T	P	I	L	K	.	.	.	.	G	N	L	Y	E	Y	F	F	N	V	D	G	V	R	.	.	.	.	.	.	.	.	S	I	D	T	G
Query Conservation																																																			.	.	.	.															.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	W	D	V	T	K	I	L	A	Y	D	E	K	G	N	K	I	Y	F	L	S	T	E	D	L	P	R	R	R	Q	L	Y	S	A	N	T	V	G	N	F	N	R	Q	C	L	S	C	D	L	V	E	N	C	T	Y	F	S	A	S	F	S	H	S	M	D	F	F	L	L	K	C	E	G	P	G	V	P	M	V
Template Known Secondary structure		S	S	S										T	T	T	T							S	S	S		T	T									S	S	T	T				B		S	S	T	T	S	S	S	S										T	T	S	S								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		T	A	M	T	N	P	Q	R	Q	V	N	S	S	M	I	L	V	P	G	S	Y	L	D	T	R	S	V	A	H	G	D	L	I	A	I	T	Y	H	S	N	A	L	Q	S	E	R	Q	M	Y	V	W	T	P	P	G	Y	T	G	M	G	E	P	L	P	V	L	Y	F	Y	H	G	F	G	D	T	G	.	.	.	R
Query Conservation																																																																														.	.	.
Alig confidence																																									.	.																	.																			.	.	.
Template Conservation																																									.	.																	.
Template Sequence		T	V	H	N	T	T	D	K	K	K	M	F	D	L	E	T	N	E	H	V	K	K	A	I	N	D	R	Q	M	P	K	V	E	Y	R	D	I	E	I	.	.	D	D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	.	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E
Template Known Secondary structure						T	T	T																			T	S				B			B						.	.	T	T						B			B		S	S			.	S	S	S												T	T
Template Predicted Secondary structure																																									.	.																	.
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.			.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.		.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	D	Q	G	R	I	P	Q	I	M	D	N	L	L	A	E	G	K	I	K	P	M	L	V	V	I	P	D	T	E	T	D	A	K	G	I	I	P	E	D	F	V	P	Q	E	R	R	K	V	F	Y	P	L	N	A	K	A	A	D	R	E	L	M	N	D	I	I	P	L	I	S	K	R	F	N	V	R	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	E	V	S	W	E	T	V	M	V	S	.	.	.	.	.	.	.	.	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	.	.	.	.	.	.	.	.	.	.	Q	Y	I
Template Known Secondary structure						S								.	.	.	.	.	.	.	.	T	T										T	T		S	S	S							T	T	T	T		T	T	T															S	S	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.									.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.											.	700	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.															320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		D	A	D	G	R	A	L	A	G	L	S	Q	G	G	Y	Q	A	L	V	S	G	M	N	.	.	.	.	H	L	E	S	F	G	W	L	A	T	F	S	G	V	T	T	T	T	V	P	D	E	G	V	A	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	P	A	A	I	N	Q	Q	L	.
Query Conservation																									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A	S	A	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E
Template Known Secondary structure												T													S	S	S	T	T					S						S					T	T	S	S	B												S	S			S	S	T	T	T	S		T					T	S			S
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																													.	.	.	.	.	.
Query SS confidence																	.																													.	.	.	.	.	.
Query Sequence		R	N	F	T	V	V	V	G	D	K	D	V	V	T	G	.	K	D	I	A	G	L	K	T	E	L	E	Q	K	K	I	N	F	D	Y	Q	E	Y	P	G	L	N	H	E	.	.	.	.	.	.	M	D	V	W	R	P	A	Y	A	A	F	V	Q	K	L	F	K
Query Conservation																	.																													.	.	.	.	.	.
Alig confidence																	.																													.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C	F	R
Template Known Secondary structure										T	T		S	S	S															T	T									T	T			S	S																			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions