Job Description P0AES6 Confidence 99.58% Date Thu Jan 5 11:24:06 GMT 2012 Rank 32 Aligned Residues 215 % Identity 16% Template c3na3A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens Resolution 2.50 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	H	C	K	E	I	I	V	T	I	H	A	D	N	.	.	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E	G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	F	D	D	N	S	Y	K	V	S	G
Query Conservation																																		.	.
Alig confidence																.	.	.			.													.	.															.	.	.	.	.	.	.	.							.										.	.	.	.	.	.
Template Conservation																.	.	.			.																													.	.	.	.	.	.	.	.							.										.	.	.	.	.	.
Template Sequence		P	A	N	A	I	K	E	M	I	E	N	C	L	D	.	.	.	A	K	.	S	T	S	I	Q	V	I	V	K	E	G	G	L	K	L	I	Q	I	Q	D	N	G	T	G	I	R	K	E	.	.	.	.	.	.	.	.	D	L	D	I	V	C	.	E	R	F	T	T	S	K	L	Q	.	.	.	.	.	.	S	F
Template Known Secondary structure																.	.	.	T	T	.		S								G	G	G	T	S								S					G	G	.	.	.	.	.	.	.	.	G	G	G	T	T	T	.	S	T	T			S	S			.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.			.																													.	.	.	.	.	.	.	.							.										.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.									.	.	.	.	.	.		.	.	80	.	.	.	.	.	.							.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																									.	.																																		.	.	.	.	.	.
Query SS confidence																									.	.																																		.	.	.	.	.	.
Query Sequence		G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	R	.	.	E	G	K	I	H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	E	T	E	K	T	G	T	M	V	R	F	.	.	.	.	.	.	W	P	S	L	E	T	F	T	N	V	T	E	F	E	Y	E
Query Conservation																									.	.																																		.	.	.	.	.	.
Alig confidence																.									.	.																									.	.								.	.	.	.	.	.
Template Conservation																.																																			.	.
Template Sequence		G	F	R	G	E	A	L	A	S	I	S	H	V	A	.	H	V	T	I	T	T	K	T	A	D	G	K	C	A	Y	R	A	S	Y	S	D	G	K	L	K	A	P	P	K	P	C	A	G	N	.	.	Q	G	T	Q	I	T	V	E	D	L	F	Y	N	I	A	T	R	R	K	A	L	K	N	P	S	E	E	Y	G
Template Known Secondary structure				T	T									S	S	.									T	T		S	S								T	T			S	S									.	.	S								S	T	T	T	T							T	S
Template Predicted Secondary structure																.																																			.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.
Predicted Secondary structure																																					.																																									.	.
Query SS confidence																																					.																																									.	.
Query Sequence		I	L	A	K	R	L	R	E	L	S	F	L	N	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H	F	H	Y	E	G	.	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N	I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	.	.	G	F
Query Conservation																																					.																																									.	.
Alig confidence																																					.																																									.	.
Template Conservation
Template Sequence		K	I	L	E	V	V	G	R	Y	S	V	H	N	A	G	I	S	F	S	V	K	K	Q	G	E	T	V	A	D	V	R	T	L	P	N	A	S	T	V	D	N	I	R	S	I	F	G	N	A	V	S	R	E	L	I	E	I	G	C	E	D	K	T	L	A	F	K	M	N	G	Y	I	S	N	A	N	Y	S	V	K
Template Known Secondary structure															T	T								T	T		S	S		S					T	T																	T	T									G	G	G	T										S	S			B	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		263	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	N	I	Y	C	F	T	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	C	I	F	L	L	F	I	N	H
Template Known Secondary structure		S								T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions