Job Description P0AES6 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 3 Aligned Residues 347 % Identity 23% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		S	S	S	I	K	V	L	K	G	L	D	A	V	R	K	R	P	G	M	Y	I	G	D	T	D	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	.	H	C	K	E	I	I	V	T	I	H
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		E	R	I	Y	Q	K	K	T	Q	L	E	H	I	L	L	R	P	D	T	Y	I	G	S	V	E	L	V	T	Q	Q	M	W	V	Y	D	E	D	V	G	I	N	Y	R	E	V	T	F	V	P	G	L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D
Template Known Secondary structure					S													T								S											T	T	T																											G	G	G	T		T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		65	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.
Predicted Secondary structure				.																																																																						.	.
Query SS confidence				.																																																																						.	.
Query Sequence		A	D	.	N	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E	G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	.	.	R	E	G	K	I	H
Query Conservation				.																																																																						.	.
Alig confidence				.																																																																						.	.
Template Conservation
Template Sequence		P	E	N	N	L	I	S	I	W	N	N	G	K	G	I	P	V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	K	F	T	V	E	T	A	S	R	E	Y	K	K	M	F
Template Known Secondary structure		T	T	T	T								S	S					S			T	T	T	T										S	S	S			S				G	G	G					S			S	S									T											G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																							.																						.	.	.
Query SS confidence																							.																						.	.	.
Query Sequence		R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	E	T	E	K	.	T	G	T	M	V	R	F	W	P	S	L	E	T	F	T	N	V	T	E	F	E	.	.	.	Y	E	I	L	A	K	R	L	R	E	L	S	F	L	N	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H	F	H
Query Conservation																							.																						.	.	.
Alig confidence																							.																.						.	.	.																													.	.	.	.	.	.
Template Conservation																																							.																																					.	.	.	.	.	.
Template Sequence		K	Q	T	W	M	D	N	M	G	R	A	G	E	M	E	L	K	P	F	N	G	E	D	Y	T	C	I	T	F	Q	P	D	L	S	K	F	K	.	M	Q	S	L	D	K	D	I	V	A	L	M	V	R	R	A	Y	D	I	A	G	S	T	K	D	V	K	V	F	L	N	G	N	K	L	P	.	.	.	.	.	.
Template Known Secondary structure							T	T	T	T												S	S											G	G	G	G	T	.		S	S																				S	S	S						T	T				S	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																																					.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N	I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	G	F	Q	E	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A	Y	M
Query Conservation
Alig confidence		.															.	.	.	.	.	.	.	.	.	.																									.
Template Conservation		.															.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		.	V	K	G	F	R	S	Y	V	D	M	Y	L	K	K	.	.	.	.	.	.	.	.	.	.	V	I	H	E	Q	V	N	H	R	W	E	V	C	L	T	M	S	E	K	G	F	Q	Q	I	.	S	F	V	N	S	I	A	T	S	K	G	G	R	H	V	D	Y	V	A	D	Q	I	V	T	K	L	V	D	V	V
Template Known Secondary structure		.															.	.	.	.	.	.	.	.	.	.								T	T									S	S	S					.				T	T				T	T		B
Template Predicted Secondary structure		.															.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
			264	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	E	G	Y	S	K	K	A	K	V	S	A	T	G	D	D	A	R	E	G	L	I	A	V	V	S	V	K	V	P	D	P	K	F	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y	L	L	E	N	P	T	D	A	K	I	V	V	G	K	I	I	D
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Sequence		K	K	.	.	.	.	.	.	.	.	.	.	K	K	A	H	Q	V	K	N	H	M	W	I	F	V	N	A	L	I	E	N	P	T	F	D	S	Q	T	K	E	N	M	T	L	Q	P	K	S	F	G	S	T	C	Q	L	S	E	K	F	I	K	A	A	I	G	C	G	.	.	.	.	.	I	V	E	S	I	L	N
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.								T	T										S	S			B	S	S	T	T			S	B				G	G	G	S	S	S															S	S	.	.	.	.	.	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template SS confidence
		342	.											.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.						400	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	A	R	E	A	A	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	V	K	F	K	A	Q	V	Q	L
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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