Job Description P0AES6 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 5 Aligned Residues 348 % Identity 27% Template c1qzrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		S	S	S	I	K	V	L	K	G	L	D	A	V	R	K	R	P	G	M	Y	I	G	D	T	D	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	.	H	C	K	E	I	I	V	T	I
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		S	D	K	Y	Q	K	I	S	Q	L	E	H	I	L	K	R	P	D	T	Y	I	G	S	V	E	T	Q	E	Q	L	Q	W	I	Y	D	E	E	T	D	C	M	I	E	K	N	V	T	I	V	P	G	L	F	K	I	F	D	E	I	L	V	N	A	A	D	N	K	V	R	D	P	S	M	K	R	I	D	V	N	I
Template Known Secondary structure					S													T							S	S											T	T	T	T																																T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		64	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140
Predicted Secondary structure				.																																																																						.	.
Query SS confidence				.																																																																						.	.
Query Sequence		H	A	.	D	N	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E	G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	.	.	Q	R	E	G	K	I
Query Conservation				.																																																																						.	.
Alig confidence				.																																																																						.	.
Template Conservation
Template Sequence		H	A	E	E	H	T	I	E	V	K	N	D	G	K	G	I	P	I	E	I	H	N	K	E	N	I	Y	I	P	E	M	I	F	G	H	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	E	F	I	L	E	T	A	D	L	N	V	G	Q	K
Template Known Secondary structure			T	T	T	T								S	S					S	B		T	T	T		S	B								S	S	S			S				T	T	S					S			S	S									T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																				.	.																																									.	.	.
Query SS confidence																				.	.																																									.	.	.
Query Sequence		H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	.	.	E	T	E	K	T	G	T	M	V	R	F	W	P	S	L	E	T	F	T	N	V	T	E	F	E	Y	E	I	L	A	K	R	L	R	E	L	S	F	L	N	.	.	.	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H
Query Conservation																				.	.																																									.	.	.
Alig confidence																				.	.																			.																						.	.	.																.	.
Template Conservation																																								.																																								.	.
Template Sequence		Y	V	Q	K	W	E	N	N	M	S	I	C	H	P	P	K	I	T	S	Y	K	K	G	P	S	Y	T	K	V	T	F	K	P	D	L	T	R	F	.	G	M	K	E	L	D	N	D	I	L	G	V	M	R	R	R	V	Y	D	I	N	G	S	V	R	D	I	N	V	Y	L	N	G	K	S	L	K	I	R	.	.
Template Known Secondary structure								T	T	T	T												S	S												G	G	G	G	.	T		S	S																				S	T	T						T	T							.	.
Template Predicted Secondary structure																																								.																																								.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N	I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	G	F	Q	E	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A
Query Conservation
Alig confidence		.	.	.	.	.											.	.	.										.	.	.																						.
Template Conservation		.	.	.	.	.											.	.	.										.	.	.																						.
Template Sequence		.	.	.	.	.	N	F	K	N	Y	V	E	L	Y	L	.	.	.	K	S	L	I	P	T	I	L	Y	.	.	.	E	R	I	N	N	R	W	E	V	A	F	A	V	S	D	I	S	F	Q	Q	I	.	S	F	V	N	S	I	A	T	T	M	G	G	T	H	V	N	Y	I	T	D	Q	I	V	K	K	I	S	E
Template Known Secondary structure		.	.	.	.	.	S							T	T	T	.	.	.	T	T				S				.	.	.					T	T									S	S	S					.				T	T				T	T		B
Template Predicted Secondary structure		.	.	.	.	.											.	.	.										.	.	.																						.
Template SS confidence
							246	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	D	K	E	G	Y	S	K	K	A	K	V	S	A	T	G	D	D	A	R	E	G	L	I	A	V	V	S	V	K	V	P	D	P	K	F	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y	L	L	E	N	P	T	D	A	K	I	V	V	G	K	I
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Sequence		I	L	K	K	.	.	.	.	.	.	.	.	.	.	V	K	S	F	Q	I	K	N	N	M	F	I	F	I	N	C	L	I	E	N	P	A	F	T	S	Q	T	K	E	Q	L	T	T	R	V	K	D	F	G	S	R	C	E	I	P	L	E	Y	I	N	K	I	M	K	T	D	.	.	.	.	.	L	A	T	R	M
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.								T	T										S	S			B	S	S	T	T			S	B				G	G	G	S	S	S													T	T	S		.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template SS confidence
		331	.	.	.											.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.
		376	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	A	R	A	R	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	I	A	D	A	N	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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