Job Description P0AES6 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 8 Aligned Residues 382 % Identity 47% Template c1kijB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of the 43k atpase domain of thermus thermophilus2 gyrase b in complex with novobiocin Resolution 2.30 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	K	V	L	K	G	L	D	A	V	R	K	R	P	G	M	Y	I	G	D	T	D	D	G	T	G	L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	H	C	K	E	I	I	V	T	I	H	A	D	N	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E	G	V
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		A	I	R	V	L	K	G	L	E	G	V	R	H	R	P	A	M	Y	I	G	G	T	G	V	.	E	G	Y	H	H	L	F	K	E	I	L	D	N	A	V	D	E	A	L	A	G	Y	A	T	E	I	L	V	R	L	N	E	D	G	S	L	T	V	E	D	N	G	R	G	I	P	V	D	L	M	P	E	E	G	K
Template Known Secondary structure								T	T							T					S		S	S		.																				T	T	S										T	T	S							S	S						S			T	T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	R	E	G	K	I	H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	.	.	E	T	E	K	T	G	T	M
Query Conservation																																																																								.	.
Alig confidence																																																																								.	.
Template Conservation
Template Sequence		P	A	V	E	V	I	Y	N	T	L	H	S	G	G	K	F	E	Q	G	A	Y	K	V	S	G	G	L	H	G	V	G	A	S	V	V	N	A	L	S	E	W	T	V	V	E	V	F	R	E	G	K	H	H	R	I	A	F	S	R	G	E	V	T	E	P	L	R	V	V	G	E	A	P	R	G	K	T	G	T	R
Template Known Secondary structure										S	S				S	G	G	G	S	S	S					S		S	S	T	T	S							T											T	T									T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	F	W	P	S	L	E	T	F	T	N	V	T	E	F	E	Y	E	I	L	A	K	R	L	R	E	L	S	F	L	N	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H	F	H	Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N	I	F	Y	F	S	T	E
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	T	F	K	P	D	P	E	I	F	G	.	N	L	R	F	D	P	S	K	I	R	A	R	L	R	E	V	A	Y	L	V	A	G	L	K	L	V	F	Q	D	R	Q	H	G	K	E	E	V	F	L	D	K	G	G	V	A	S	F	A	K	A	L	A	E	G	E	D	L	L	Y	E	K	P	F	L	I	R	G	T
Template Known Secondary structure												T	.	T																			T	T	T								T	T	T	T								T	T										T	T	T	S		B	S	S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	G	I	G	V	E	V	A	L	Q	W	N	D	G	F	Q	E	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A	Y	M	D	K	E	G	Y	S	K	K	A	K	V	S	A	T	G	D	D	A	R	E	G	L	I	A	V	V	S	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	E	V	E	V	E	V	G	F	L	H	T	Q	G	Y	N	A	E	I	L	T	Y	A	N	M	I	P	T	R	D	G	G	T	H	L	T	A	F	K	S	A	Y	S	R	A	L	N	Q	Y	A	K	K	A	G	L	N	K	E	K	G	P	Q	P	T	G	D	D	L	L	E	G	L	Y	A	V	V	S	V	K
Template Known Secondary structure			T	T										B	S	S	S									T	T				T	T		B																						T			S	T	T					S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	D	P	K	F	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y	L	L	E	N	P	T	D	A	K	I	V	V	G	K	I	I	D	A	A	R	A	R	E	A	A	R	R	A	R	E	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	N	P	Q	F	E	G	Q	T	K	G	K	L	L	N	P	E	A	G	T	A	V	G	Q	V	V	Y	E	R	L	L	E	I	L	E	E	N	P	R	I	A	K	A	V	Y	E	K	A	L	R	A	A	Q	A	R	E	A	A	R	K	A	R	E	L	V
Template Known Secondary structure			S	S			B	S	S	S	S		S	S	B																																																		T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions