Job Description P0A996 Confidence 99.75% Date Thu Jan 5 11:09:41 GMT 2012 Rank 1 Aligned Residues 261 % Identity 14% Template c3kwlA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori Resolution 1.94 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	D	V	K	I	G	D	I	I	Q	R	A	R	A	K	Y	D	T	T	R	P	S	L	R	N	F	V	L	S	H	T	D	L	M	G	S	V	S	T	P	F	A	P	I	V	N	T	A	T	S	L	K	P	V	R	Q	L	L	D	A	A	L	K	I	D	H	R	R	T	L	P	K	Y	S	F	G	T	F	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Sequence		K	N	D	D	N	I	D	H	E	I	Y	E	L	Q	E	I	L	T	N	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	P	W	K	D	F	S	K	N	L	L	S	L	F	Q	Y	H	S	N	P	P	.	.	.	.	.	.	.
Template Known Secondary structure		T																		T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T										T	T					S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																															.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	Y	R	S	V	A	A	Q	Q	A	Q	Y	K	D	Q	V	A	F	F	H	G	C	F	V	N	Y	N	H	P	Q	L	G	K	D	L	I	K	V	L	N	A	M	G	T	G	V	Q	L	L	S	K	E	K	C	C	G	V	P	L	I	A	N	G	F	T	D	K	A	R	K	Q	A	I	T	N	V	E	S	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																								.
Template Conservation		.	.	.	.	.	.	.	.																																																								.
Template Sequence		.	.	.	.	.	.	.	.	K	T	P	N	P	P	K	T	C	A	L	F	N	A	Y	A	K	H	L	D	V	Q	S	L	L	K	S	A	K	L	Y	L	E	K	X	G	Q	K	T	I	D	L	P	F	C	Y	D	G	G	Y	Y	G	K	I	I	.	S	T	H	D	F	L	T	A	S	A	Y	N	L	A	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.						T	T										T	T	S																T	T													T	T	T					.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																								.
Template SS confidence
										227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	A	V	G	V	K	G	I	P	V	I	A	T	S	S	T	C	T	F	A	L	R	D	E	Y	P	E	V	L	N	V	D	N	K	G	L	R	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	L	A	T	R	W	L	W	R	K	L	D	E	G	K	T	L	P	L	K	P	L	P	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation				.	.	.	.																																																																									.	.
Template Sequence		K	A	.	.	.	.	N	G	V	S	L	I	F	C	E	E	D	A	Y	L	N	I	L	H	A	K	E	V	L	D	N	N	P	E	I	I	N	S	V	N	E	K	L	K	K	Y	Q	L	V	Y	E	K	D	I	E	I	V	Y	L	N	E	W	V	N	E	F	L	A	W	E	L	K	S	P	F	D	A	F	.	.
Template Known Secondary structure				.	.	.	.	T	T							S															T	T													G	G	G	T					S																	S				S			T	T		.	.
Template Predicted Secondary structure				.	.	.	.																																																																									.	.
Template SS confidence
		298	.					300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		292	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		K	V	V	Y	H	T	P	.	.	.	.	C	H	M	E	K	M	G	W	T	L	Y	T	L	E	L	L	R	N	I	P	G	L	E	L	T	V	L	D	S	Q	C	C	G	I	A	G	T	Y	G	F	K	K	E	N	Y	P	T	S	Q	A	I	G	A	P	L	F	R	Q	I	E	E	S	G	A	D	L	V	V	T
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		V	G	A	E	F	S	R	I	K	Q	S	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	N	K	I	H	L	K	A	P	H	F	L	E	S	F	Q	N	Y	A	P	L	L	E	V	.	.	.	N	E	A	S	G	L	L	Q	C	A	H	L	R	Y	L	G	I	D	L	G	A	D	F	L	I	A
Template Known Secondary structure		B						S	S						.	.	.	.	.	.	.	.	.	.	.	.	.						T		B					G	G	G	G				G	G	G	G	G	T	.	.	.																			T	T		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.														.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.				410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380													.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	C	E	T	C	K	W	Q	I	E	M	S	T	.	.	.	.	.	.	.	.	.	.	.	.	S	L	R	C	E	H	P	I	T	L	L	A	Q	A	L
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	L	G	L	F	Y	A	F	E	N	L	S	L	K	A	S	K	I	Y	K	R	D	N	D	N	T	P	T	L	F	L	P	Q	I	A	L	X	A	X
Template Known Secondary structure		S									T	T	T						T	T	S		S																		T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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