 |
Job Description | P0A996 | Confidence | 80.36% | Date | Thu Jan 5 11:09:41 GMT 2012 |
Rank | 68 | Aligned Residues | 96 |
% Identity | 11% | Template | c2jfzB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:glutamate racemase; |
PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
|
Resolution | 1.86 Å |
|
 |
  |   |
291 | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
L | K | V | V | Y | H | T | P | C | H | M | E | K | M | G | W | T | L | Y | T | L | E | L | L | R | N | I | P | G | L | E | L | T | V | L | D | S | Q | C | C | G | I | A | G | T | Y | G | F | K | K | E | N | Y | P | T | S | Q | A | I | G | A | P | L | F | R | Q | I | E | E | S | G | A | D | L | V | V | T | D | C | . |
Query Conservation |   |
  |   |
|   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|   |
| . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|   |
|
|
|
|
|
|
| . | . | . | . |   |
|
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |   |
|   | . | . | . | . | . |   |   |   |
|
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|
|
|
|
|
|
Template Sequence |   |
M | K | I | G | V | F | D | S | G | . |
. |
. |
. |
V | G | G | F | S | V | L | K | S | L | L | K | A | R | L | F | D | E | I | I | Y | Y | G | D | S | . |
. |
. |
. |
. |
A | R | V | P | Y | G | T | K | D | P | T | T | I | K | Q | F | G | L | E | A | L | D | F | F | K | P | H | E | I | E | L | L | I | V | A | C | N |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S | S | . | . | . | . | G | G | G |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |
| T | . | . | . | . | . | T | T |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
| S |  |  |  |  |
|
|  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | |
|
|
|
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
|
|
|
370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
E | T | C | K | W | Q | I | E | M | S | T | S | L | R | C | E | H | P | I | T | L | L | A | Q | A | L |
Query Conservation |   |
. | . | . |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |
|
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|
|   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|
Template Sequence |   |
T | A | S | A | L | A | L | E | E | M | Q | K | Y | S | K | I | P | I | V | G | V | I | E | P | S | I | L | A | I |
Template Known Secondary structure |   |
 |  |  |  |  | T |  |  |  |  |  |  | T |
| S | S |
|  |  |  | S | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|