Job Description P45508 Confidence 14.04% Date Thu Jan 5 12:02:51 GMT 2012 Rank 47 Aligned Residues 187 % Identity 10% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		1057	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	H	G	Y	A	V	G	L	T	S	S	W	F	Q	H	G	N	Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	S	E	Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q
Query Conservation
Alig confidence																																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		K	A	R	T	W	E	L	G	T	R	Y	D	D	G	A	L	T	A	E	M	G	L	F	L	I	N	F	N	N	Q	Y	D	S	N	Q	T	N	D	T	V	T	A	R	G	K	T	R	H	T	G	L	E	T	Q	A	R	Y	D	L	G	T	L	T	P	T	L	D	N	V	S	I	.	.	Y	A	S	Y	A	Y	V
Template Known Secondary structure															S	S																S	S			S	S	S			T	T																		G	G	G	T		G	G	G	T	T				.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.			.	.	.	610	.	.	.
		1137	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.			.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	H	V	I	P	T	L	D	L	N	Y	Y	H	D	.	.	P	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V
Query Conservation																																																				.	.
Alig confidence																																	.	.	.	.	.															.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	.	.	.	.	.	G	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S	A	D	G	S	T	G	R	I	P	G	F	M	L	W	G	A	R	V
Template Known Secondary structure							S	S	S	T	T	T	T		B		T	T			S												.	.	.	.	.	T	T													B		S	S	T	T				S			T	T	S	S	S	S		B
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.						.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		1215	.	.	.	.				1220	.	.	.	.	.	.	.	.										.	1230	.	.	.	.	.	.	.	.	.	1240						.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure							.	.	.										.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence							.	.	.										.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		T	G	N	I	S	.	.	.	Q	R	V	S	L	R	G	S	V	.	.	.	.	.	.	.	.	.	A	W	Q	K	G	S	D	D	F	A	Q	T	.	.	.	.	.	A	G	F	L	S	M	T	V	K	W
Query Conservation							.	.	.										.	.	.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence							.	.	.										.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V	K	N	I	F	D	Q	D	Y	F	I	R	S	Y	D	D	N	N	K	G	I	Y	A	G	Q	P	R	T	L	Y	M	Q	G	S	L	K	F
Template Known Secondary structure							T	T	T	T										S	T	T										S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions