Job Description P45508 Confidence 99.75% Date Thu Jan 5 12:02:51 GMT 2012 Rank 7 Aligned Residues 534 % Identity 13% Template d1daba_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Virulence factor P.69 pertactin Resolution 2.50

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		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	I	T	K	T	G	S	G	D	L	V	L	N	A	D	N	N	D	F	T	G	E	M	Q	I	E	N	G	E	V	T	L	G	R	S	N	S	L	M	N	V	G	D	T	H	C	Q	D	D	P	Q	D	C	Y	G	L	T	I	G	S	I	D	Q	Y	Q	N	Q	A	E	L	N	V	G	S	T	Q	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	S	I	V	K	T	G	E	R	Q	H	G	I	H	I	Q	G	S	D	P	G	G	V	R	T	A	S	G	T	T	I	K	V	S	G	R	Q	A	Q	G	I	L	L	E	N	P	A	A	E	L	Q	F	R	N	G	S	V	T	S	S	G	Q	L	S	D	D	G	I	R	R	F	L	G	T	V	T	V	K	A
Template Known Secondary structure		S							S	T	T			S					T	T	S									S							S	T	T			S														S							S			B		S	S	S	S		B			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	A	L	T	G	F	Q	N	G	T	L	N	I	D	A	G	G	N	V	T	V	N	Q	G	S	F	A	G	I	I	E	G	A	G	Q	L	T	I	A	Q	N	G	S	Y	V	L	A	G	A	Q	S	M	A	L	T	G	D	I	V	V	D	D	G	A	V	L	S	L	E	G	D	A	A	D	L	T	A	L
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		G	K	L	V	A	D	H	A	T	L	A	N	V	G	D	T	W	D	D	D	G	I	A	L	Y	V	A	G	E	Q	A	Q	A	S	I	A	D	S	T	L	Q	G	A	G	G	V	Q	I	E	R	G	A	N	V	T	V	Q	R	S	A	I	V	D	G	G	.	.	L	H	I	G	A	L	Q	S	L	Q	P	E	D
Template Known Secondary structure								S							S		T	T	T	S									S	T	T							S					S	T	T						T	T							S					S	B		.	.						S	S			S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	D	P	Q	S	I	V	L	N	G	G	V	L	D	L	S	D	F	S	T	W	Q	S	G	T	S	Y	N	D	G	L	E	V	S	G	S	S	G	T	V	I	G	S	Q	D	V	V	D	L	A	G	G	D	N	L	H	I	G	G	D	G	K	D	G	V	Y	V	V	V	D	A	S	D	G	Q	V	S	L	A
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		L	P	P	S	R	V	V	L	R	D	T	N	V	T	A	V	P	A	S	G	A	P	A	A	V	S	V	L	G	A	S	E	L	T	L	D	G	G	H	I	T	G	G	R	A	A	G	V	A	A	M	Q	G	A	V	V	H	L	Q	R	A	T	I	R	R	G	D	A	L	A	G	G	.	.	.	.	.	.	.	.
Template Known Secondary structure		S									S							T	T	S			S							S	S														S	S							S	S												S						S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	N	S	Y	L	G	T	T	Q	I	A	S	G	T	L	M	V	S	D	N	S	Q	L	G	D	T	H	Y	N	R	Q	V	I	F	T	D	K	Q	Q	E	S	V	M	E	I	T	S	D	V	D	T	R	S	D	A	A	G	H	G	R	D	I	E	M	R	A	D	G	E	V	A	V	D	A	G	V	D	T	Q
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	V	P	G	G	A	V	P	G	G	A	V	P	G	G	F	G	P	G	G	F	G	P	V	L	D	G	W	Y	G	V	D	V	S	G	S	S	V	E	L	A	Q	S	I	V	E	A	P	E	L	G	A	A	I	R	V	G	R	G	A	R	V	T	V	P	G	G	S	L	S	A	P	H	G	N	V	I	E
Template Known Secondary structure		.	.	S	S	S		S	S			S					S	S	S			S	S				S	S		S								S	S						S							S	S								T	T							S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	A	L	M	A	D	S	S	G	Q	H	Q	D	E	G	S	T	L	T	K	T	G	A	G	T	L	E	L	T	A	S	G	T	T	Q	S	A	V	R	V	E	E	G	T	L	K	G	D	V	A	D	I	L	P	Y	A	S	S	L	W	V	G	D	G	A	T	F	V	T	G	A	D	Q	D	I	Q	S	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	G	A	R	R	F	A	P	Q	A	A	P	L	S	I	T	L	Q	A	G	A	H	A	Q	G	K	A	L	L	Y	R	V	L	P	E	P	V	K	L	T	L	T	G	G	A	D	A	Q	G	D	I	V	A	T	E	L	P	S	I	P	G	T	S	I	G	P	L	D	V	A	L	A	S	Q	A	R	W	T	G
Template Known Secondary structure						S	S			S	S	S									T	T													S	S									T	T											S		S	S	S		G	G	G	S									T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	S	S	G	T	I	D	I	S	D	G	T	V	L	R	L	T	G	Q	D	T	S	V	A	L	N	A	S	L	F	N	G	D	G	T	L	V	N	A	T	D	G	V	T	L	T	G	E	L	N	T	N	L	E	T	D	S	L	T	Y	L	S	N	V	T	V	N	G	N	L	T	N	T	S	G	A	V	S	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	R	A	V	D	S	L	S	I	D	N	A	T	W	V	M	T	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	V	G	A	L	R	L	A	S	D	G	S	V	D	F	Q	Q
Template Known Secondary structure			B	S									S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																																											.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		805	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	V	A	G	D	T	L	T	V	N	G	D	Y	T	G	G	G	T	L	L	L	D	S	E	L	N	G	D	D	S	V	S	D	Q	L	V	M	N	G	N	T	A	G	N	T	T	V	V	V	N	S	I	T	G	I	G	E	P	T	S	T	G	I	K	V	V	D	F	A	A	D	P	T	Q	F	Q	N	N
Query Conservation
Alig confidence																											.	.																														.																			.	.	.	.	.
Template Conservation																											.	.																														.																			.	.	.	.	.
Template Sequence		P	A	E	A	G	R	F	K	V	L	T	V	N	T	L	A	G	S	G	L	F	R	M	N	V	.	.	F	A	D	L	G	L	S	D	K	L	V	V	M	Q	D	A	S	G	Q	H	R	L	W	V	R	N	S	G	S	.	E	P	A	S	A	N	T	L	L	L	V	Q	T	P	L	G	S	A	.	.	.	.	.
Template Known Secondary structure			S	S	T	T																					.	.		G	G	G	T													S										S		.			S	S											S	S			.	.	.	.	.
Template Predicted Secondary structure																											.	.																														.																			.	.	.	.	.
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		885	.	.	.	.	890	.	.		.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.		910	.	.	.	.	.	.	.	.	.	920
Predicted Secondary structure										.																		.
Query SS confidence										.																		.
Query Sequence		A	Q	F	S	L	A	G	S	.	G	Y	V	N	M	G	A	Y	D	Y	T	L	V	E	D	N	N	.	D	W	Y	L	R	S	Q	E	V	T	P
Query Conservation										.																		.
Alig confidence										.																		.
Template Conservation
Template Sequence		A	T	F	T	L	A	N	K	D	G	K	V	D	I	G	T	Y	R	Y	R	L	A	A	N	G	N	G	Q	W	S	L	V	G	A	K	A	P	P
Template Known Secondary structure								S	G	G	G					T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.