Job Description P45508 Confidence 13.37% Date Thu Jan 5 12:02:51 GMT 2012 Rank 48 Aligned Residues 218 % Identity 8% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		1019	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		L	F	S	G	R	W	G	T	D	G	E	W	M	L	G	I	V	G	G	Y	S	D	N	Q	G	D	S	R	S	N	M	T	G	T	R	A	D	N	Q	N	H	G	Y	A	V	G	L	T	S	S	W	F	Q	H	G	N	Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	.	.	S	E
Query Conservation																																																																														.	.
Alig confidence																																																						.	.	.	.	.																				.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	.	.	.	.	.	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P
Template Known Secondary structure										T	T	S																	B		T	T	S		B																		S	.	.	.	.	.	S	S																					S
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530						.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	H	V	I
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	.	.	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T
Template Known Secondary structure		S			S																					S	S	S	S				.	.															T	T	T	T	T				T	T			S													S	S	T	T	T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.			.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220					.	.	.	.	.	.	.	.	.								1230	.	.	.	.	.	.	.	.	.	1240
Predicted Secondary structure																																														.	.	.	.										.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																																														.	.	.	.										.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		P	T	L	D	L	N	Y	Y	H	D	P	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G	N	I	S	Q	.	.	.	.	R	V	S	L	R	G	S	V	A	.	.	.	.	.	.	.	W	Q	K	G	S	D	D	F	A	Q	T	.	.	.	.	.
Query Conservation																																														.	.	.	.										.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																							.	.	.	.										.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	.	.	.	.	.	.	.	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R
Template Known Secondary structure														S	S	T	.	.	.	.	.	.	.	T			S																T	T	T	T	T		T	T									S	T	T											T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.								.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
		1241	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	F	L	S	M	T	V	K	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		705	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions